Evidence map›Paper›PMID 32415073›Full record

ArticleNature communications2020

Structural and biochemical characterization of the exopolysaccharide deacetylase Agd3 required for Aspergillus fumigatus biofilm formation.

Natalie C Bamford, François Le Mauff, Jaime C Van Loon, Hanna Ostapska, Brendan D Snarr, Yongzhen Zhang, Elena N Kitova, John S Klassen, Jeroen D C Codée, Donald C Sheppard and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Bacillus cereus PelAThe Journal of biological chemistry · 2026
    Article
  3. Review
  4. Review
  5. Review
  6. TheJournal of fungi (Basel, Switzerland) · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Recent developments inMicrobiology and molecular biology reviews : MMBR · 2025
    Review
  11. Characterization of theMicroorganisms · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Frontiers in microbiology · 2024
    Article
  16. Article
  17. UnderstandingCell surface (Amsterdam, Netherlands) · 2023
    Review
  18. Article
  19. Review
  20. Identification of Compounds PreventingInternational journal of molecular sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Natalie C Bamford *Program in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada.ORCID http://orcid.org/0000-0003-1959-856X
François Le Mauff *Department of Microbiology and Immunology, Faculty of Medicine, McGill University, Montreal, QC, H3A 2B4, Canada.
Jaime C Van LoonProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada.
Hanna OstapskaDepartment of Microbiology and Immunology, Faculty of Medicine, McGill University, Montreal, QC, H3A 2B4, Canada.
Brendan D SnarrDepartment of Microbiology and Immunology, Faculty of Medicine, McGill University, Montreal, QC, H3A 2B4, Canada.
Yongzhen ZhangLeiden Institute of Chemistry, Leiden University, 2300RA, Leiden, The Netherlands.ORCID http://orcid.org/0000-0002-7644-2011
Elena N KitovaAlberta Glycomics Centre and Department of Chemistry, University of Alberta, Edmonton, AB, T6G 2G2, Canada.
John S KlassenAlberta Glycomics Centre and Department of Chemistry, University of Alberta, Edmonton, AB, T6G 2G2, Canada.
Jeroen D C CodéeLeiden Institute of Chemistry, Leiden University, 2300RA, Leiden, The Netherlands.ORCID http://orcid.org/0000-0003-3531-2138
Donald C SheppardDepartment of Microbiology and Immunology, Faculty of Medicine, McGill University, Montreal, QC, H3A 2B4, Canada. donald.sheppard@mcgill.ca.
P Lynne HowellProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada. howell@sickkids.ca.ORCID http://orcid.org/0000-0002-2776-062X
McGill University Health Centre · CALeiden University · NLUniversity of Alberta · CAUniversity of Toronto · CAUniversity of Dundee · GB

Funding

Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
CIHR 123306CIHR 43998CIHR 81361CIHR FDN-154327CIHR FDN-159902NIGMS NIH HHS P41 GM111244
6 · The paper itself

Abstract

The exopolysaccharide galactosaminogalactan (GAG) is an important virulence factor of the fungal pathogen Aspergillus fumigatus. Deletion of a gene encoding a putative deacetylase, Agd3, leads to defects in GAG deacetylation, biofilm formation, and virulence. Here, we show that Agd3 deacetylates GAG in a metal-dependent manner, and is the founding member of carbohydrate esterase family CE18. The active site is formed by four catalytic motifs that are essential for activity. The structure of Agd3 includes an elongated substrate-binding cleft formed by a carbohydrate binding module (CBM) that is the founding member of CBM family 87. Agd3 homologues are encoded in previously unidentified putative bacterial exopolysaccharide biosynthetic operons and in other fungal genomes.

Indexed as

AcetylationAmidohydrolasesAmino Acid SequenceAspergillus fumigatusBiofilmsCatalytic DomainConserved SequenceFungal ProteinsGene Expression Regulation, FungalGlycosaminoglycansMetalsPolysaccharidesProtein DomainsStructural Homology, ProteinStructure-Activity RelationshipSubstrate SpecificityAmidohydrolasesFungal ProteinsGlycosaminoglycansMetalsPolysaccharides

Identifiers

PMID32415073
PMCPMC7229062
OpenAlexW3025501143

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.