Evidence map›Paper›PMID 32414076›Full record

ArticleViruses2020

Global Transmission, Spatial Segregation, and Recombination Determine the Long-Term Evolution and Epidemiology of Bovine Coronaviruses.

Elias Salem, Vijaykrishna Dhanasekaran, Herve Cassard, Ben Hause, Sarah Maman, Gilles Meyer, Mariette F Ducatez

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review a brief history of coronaviruses in Thailand.Journal of virological methods · 2021
    Review
  17. Review
  18. Article
  19. Article
  20. Animal Coronaviruses in the Light of COVID-19.Journal of veterinary research · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 4 countries.

Elias SalemIHAP, Université de Toulouse, INRAE, ENVT, 31076 Toulouse, France.
Vijaykrishna DhanasekaranBiomedicine Discovery Institute and Department of Microbiology, Monash University, Melbourne, VIC 3800, Australia.ORCID 0000-0003-3293-6279
Herve CassardIHAP, Université de Toulouse, INRAE, ENVT, 31076 Toulouse, France.
Ben HauseDiagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan Kansas, KS 66506-5802, USA.
Sarah MamanSIGENAE, GenPhySE, Université de Toulouse, INRAE, INPT, ENVT, 31326 Castanet Tolosan, France.
Gilles MeyerIHAP, Université de Toulouse, INRAE, ENVT, 31076 Toulouse, France.
Mariette F DucatezIHAP, Université de Toulouse, INRAE, ENVT, 31076 Toulouse, France.
École Nationale Vétérinaire de Toulouse · FRAustralian Regenerative Medicine Institute · AUKansas State University · US

Funding

Institut Carnot Santé Animale (ICSA) RESPICARE
6 · The paper itself

Abstract

Bovine coronavirus (BCoV) is widespread in cattle and wild ruminant populations throughout the world. The virus causes neonatal calf diarrhea and winter dysentery in adult cattle, as well as upper and lower respiratory tract infection in young cattle. We isolated and deep sequenced whole genomes of BCoV from calves with respiratory distress in the south-west of France and conducted a comparative genome analysis using globally collected BCoV sequences to provide insights into the genomic characteristics, evolutionary origins, and global diversity of BCoV. Molecular clock analyses allowed us to estimate that the BCoV ancestor emerged in the 1940s, and that two geographically distinct lineages diverged from the 1960s-1970s. A recombination event in the spike gene (breakpoint at nt 1100) may be at the origin of the genetic divergence sixty years ago. Little evidence of genetic mixing between the spatially segregated lineages was found, suggesting that BCoV genetic diversity is a result of a global transmission pathway that occurred during the last century. However, we found variation in evolution rates between the European and non-European lineages indicating differences in virus ecology.

Indexed as

AnimalsCattleCattle DiseasesCoronavirus, BovineCoronavirus InfectionsEvolution, MolecularFranceGastrointestinal DiseasesGenome, ViralGeographyPhylogenyRespiratory Tract InfectionsSelection, GeneticViral Tropismbovine coronavirusFrancegeographic clusteringmolecular clockrecombination

Identifiers

PMID32414076
PMCPMC7290379
OpenAlexW3026003933

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.