Evidence map›Paper›PMID 32413307›Full record

ArticleCurrent biology : CB2020

Linking Virus Discovery to Immune Responses Visualized during Zebrafish Infections.

Keir M Balla, Marlen C Rice, James A Gagnon, Nels C Elde

Open access · bronzeAbstract read
In one paragraph

Article in Current biology : CB, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  4. PGE2 modulation of stimulus valence directs zebrafish behavioral fever.bioRxiv : the preprint server for biology · 2026
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  17. Leafy and weedy seadragon genomes connect genic and repetitive DNA features to the extravagant biology of syngnathid fishes.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Keir M BallaDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.
Marlen C RiceSchool of Biological Sciences, University of Utah, Salt Lake City, UT 84112, USA.
James A GagnonSchool of Biological Sciences, University of Utah, Salt Lake City, UT 84112, USA.
Nels C EldeDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112, USA. Electronic address: nelde@genetics.utah.edu.
University of Utah · US

Funding

Training Program in Microbial PathogenesisT32AI055434 · NIAID · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI MULVEY, MATTHEW A, PLANELLES, VICENTE · 2004 to 2025
$6.0M
Evolutionary innovations from host-microbe interactionsR35GM134936 · NIGMS · UNIVERSITY OF UTAH · PI ELDE, NELS C. · 2020 to 2024
$1.7M
Mechanisms of mimicry underlying the evolution of a model poxvirusR01GM114514 · NIGMS · UNIVERSITY OF UTAH · PI ELDE, NELS C. · 2015 to 2019
$1.6M
NIAID NIH HHS T32 AI055434NIGMS NIH HHS R01 GM114514NIGMS NIH HHS R35 GM134936
6 · The paper itself

Abstract

The discovery of new viruses currently outpaces our capacity for experimental examination of infection biology. To better couple virus discovery with immunology, we genetically modified zebrafish to visually report on virus infections. After generating a strain that expresses green fluorescent protein (GFP) under an interferon-stimulated gene promoter, we repeatedly observed transgenic larvae spontaneously expressing GFP days after hatching. RNA sequencing comparisons of co-housed GFP-positive and GFP-negative zebrafish revealed a naturally occurring picornavirus that induced a canonical interferon-mediated response and hundreds of antiviral defense genes not observed following immunostimulatory treatments or experimental infections with other viruses. Among the many genes induced by picornavirus infection was a large set encoding guanosine triphosphatase (GTPase) of immunity-associated proteins (GIMAPs). The GIMAP gene family is massively expanded in fish genomes and may also play a crucial role in antiviral responses in mammals, including humans. We subsequently detected zebrafish picornavirus in publicly available sequencing data from seemingly asymptomatic zebrafish in many research institutes and found that it altered gene expression in a previous study of zebrafish development. Experiments revealed a horizontal mode of virus transmission, highlighting a system for studying the spread of picornavirus infections within and between individuals. Our study describes a naturally occurring picornavirus that elicits strong antiviral responses in zebrafish and provides new strategies for simultaneously discovering viruses and their impact on vertebrate hosts.

Indexed as

Host-Pathogen InteractionsZebrafishAnimalsAnimals, Genetically ModifiedFish DiseasesGreen Fluorescent ProteinsMalePicornaviridaePicornaviridae InfectionsGreen Fluorescent ProteinsevolutionGIMAPhost-pathogenimmunityinfectioninterferonISG15picornavirusviruszebrafish

Identifiers

PMID32413307
PMCPMC7854381
OpenAlexW3025085336

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.