Evidence map›Paper›PMID 32413184›Full record

ArticleCancer2020

Estimation of the carrier frequency of fumarate hydratase alterations and implications for kidney cancer risk in hereditary leiomyomatosis and renal cancer.

Brian Shuch, Shantao Li, Harvey Risch, Ranjit S Bindra, Patrick D McGillivray, Mark Gerstein

Open access · greenAbstract read
In one paragraph

Article in Cancer, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
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  7. Skin cancer risk in hereditary mixed cancer syndromes.Hereditary cancer in clinical practice · 2025
    Review
  8. Article
  9. Article
  10. The impact of the new WHO classification of renal cell carcinoma on the diagnosis of hereditary leiomyomatosis and renal cell carcinoma.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2025
    Review
  11. Review
  12. Article
  13. Article
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  16. Article
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  18. Article
  19. Comprehensive Molecular Characterization and Response to Therapy in Fumarate Hydratase-Deficient Renal Cell Carcinoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2021
    Article
  20. Imaging features of fumarate hydratase-deficient renal cell carcinomas: a retrospective study.Cancer imaging : the official publication of the International Cancer Imaging Society · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Brian ShuchDepartment of Urology and Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, Connecticut.ORCID 0000-0003-2065-3570
Shantao LiProgram in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut.
Harvey RischDivision of Chronic Disease Epidemiology, Yale School of Public Health, New Haven, Connecticut.
Ranjit S BindraDepartment of Therapeutic Radiology, Yale University, New Haven, Connecticut.
Patrick D McGillivrayProgram in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut.
Mark GersteinProgram in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut.
Yale University · USUniversity of California, Los Angeles · US

Funding

Yale Center for Mendelian GenomicsUM1HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2016 to 2020
$14.8M
Prioritizing rare variants associated with cancer using non-coding annotationR01HG008126 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER · 2016 to 2018
$2.4M
Exploiting Mutant IDH1/2-induced Homologous Recombination Defects in CancerR01CA215453 · NCI · YALE UNIVERSITY · PI BINDRA, RANJIT · 2017 to 2021
$1.9M
Genomic Heterogeneity and the Small Renal MassK08CA207845 · NCI · YALE UNIVERSITY · PI SHUCH, BRIAN · 2016 to 2019
$682k
NCI NIH HHS K08 CA207845NCI NIH HHS R01 CA215453NHGRI NIH HHS R01 HG008126NHGRI NIH HHS UM1 HG006504NIH HHS 1K08CA207845-01NIH HHS R01 HG008126NIH HHS UM1 HG006504
6 · The paper itself

Abstract

backgroundHereditary leiomyomatosis and renal cancer (HLRCC) is a cancer syndrome associated with a germline mutation in fumarate hydratase (FH). The syndrome is associated with cutaneous and uterine leiomyomas, and some patients develop a lethal form of kidney cancer. This study provides estimates for the FH carrier frequency and kidney cancer penetrance.

methodsData sets containing sequencing data for the FH gene were used: the 1000 Genomes Project (1000GP) and the Exome Aggregation Consortium (ExAC). Alterations in the FH gene were characterized on the basis of different variant risk tiers: 1) ClinVar annotated variants, 2) loss-of-function alterations, and 3) highly impactful missense alterations. The cumulative incidence of FH alterations overall and by different world populations was evaluated in 1000GP and ExAC. A lifetime penetrance of HLRCC kidney cancer risk was generated with 3 estimates of the annual incidence.

resultsThe overall allele frequencies of tier 1 to 3 FH alterations in the ExAC and 1000GP data sets were 2.54 × 10

conclusionsFH alterations are common and are carried by approximately 1 in 1000 individuals according to the more conservative estimates. The lifetime kidney cancer penetrance appears lower than previously estimated. Although databases are not population cohorts, they provide a useful quantitative estimate of rare variants with low penetrance.

Indexed as

Genetic Predisposition to DiseaseAdultExomeFemaleFumarate HydrataseGene FrequencyGerm-Line MutationHeterozygoteHumansKidneyKidney NeoplasmsLeiomyomatosisMaleMiddle AgedNeoplastic Syndromes, HereditaryRisk FactorsFumarate Hydratasefumarate hydratase (FH)hereditaryhereditary leiomyomatosis and renal cancer (HLRCC)renal cell carcinoma

Identifiers

PMID32413184
PMCPMC10316675
OpenAlexW3024547843

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.