ArticleThe Plant journal : for cell and molecular biology2020
Transcriptome and epigenome analyses of vernalization in Arabidopsis thaliana.
Article in The Plant journal : for cell and molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed, 61 citations in OpenAlex.
- Vernalization-responsive intronless genes in faba bean and the development of KASP markers.Plant cell reports · 2026Article
- Vernalization attenuates age-dependent decline of glucosinolates in cabbage (Brassica oleracea ssp. capitata) through coordinated transcriptomic and metabolomic reprogramming.BMC plant biology · 2026Article
- Chromatin remodeling at the C-REPEAT BINDING FACTOR cluster controls growth retardation at low ambient temperature.The Plant cell · 2026Article
- Handling the heat: ocean acidification mitigates the effects of marine heatwaves on Posidonia oceanica seedlings.Journal of experimental botany · 2025Article
- CK2 kinase-PRC2 signalling regulates genome-wide H3K27 trimethylation and transduces prolonged cold exposure into epigenetic cold memory in plants.Nature plants · 2025Article
- Small molecules and heat treatments reverse vernalization via epigenetic modification in Arabidopsis.Communications biology · 2025Article
- Dynamic changes in the transcriptome of tropical region-originated king grasses in response to cold stress.Frontiers in plant science · 2025Article
- Identification of vernalization-related genes and cold memory element (CME) required for vernalization response in radish (Raphanus sativus L.).Plant molecular biology · 2024Article
- Cold stress induces rapid gene-specific changes in the levels of H3K4me3 and H3K27me3 inFrontiers in plant science · 2024Article
- Predmoter-cross-species prediction of plant promoter and enhancer regions.Bioinformatics advances · 2024Article
- Distinct accessory roles ofGenes & development · 2023Article
- Warm temperature-triggered developmental reprogramming requires VIL1-mediated, genome-wide H3K27me3 accumulation in Arabidopsis.Development (Cambridge, England) · 2023Article
- Genome-wide characterization and expression analysis of MADS-box transcription factor gene family inFrontiers in plant science · 2023Article
- WRKY63 transcriptional activation of COOLAIR and COLDAIR regulates vernalization-induced flowering.Plant physiology · 2022Article
- The two clock proteins CCA1 and LHY activate VIN3 transcription during vernalization through the vernalization-responsive cis-element.The Plant cell · 2022Article
- Dynamic changes in the transcriptome landscape ofFrontiers in plant science · 2022Article
- Transcriptomic and metabolic analyses revealed the modulatory effect of vernalization on glucosinolate metabolism in radish (Raphanus sativus L.).Scientific reports · 2021Article
- Single-cell RNA-seq describes the transcriptome landscape and identifies critical transcription factors in the leaf blade of the allotetraploid peanut (Arachis hypogaea L.).Plant biotechnology journal · 2021Article
- Phytochrome B triggers light-dependent chromatin remodelling through the PRC2-associated PHD finger protein VIL1.Nature plants · 2021Article
- Transcriptome analysis reveals Vernalization is independent of cold acclimation in Arabidopsis.BMC genomics · 2021Article
Corrections and comments
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
Abstract
Vernalization accelerates flowering after prolonged winter cold. Transcriptional and epigenetic changes are known to be involved in the regulation of the vernalization response. Despite intensive applications of next-generation sequencing in diverse aspects of plant research, genome-wide transcriptome and epigenome profiling during the vernalization response has not been conducted. In this work, to our knowledge, we present the first comprehensive analyses of transcriptomic and epigenomic dynamics during the vernalization process in Arabidopsis thaliana. Six major clusters of genes exhibiting distinctive features were identified. Temporary changes in histone H3K4me3 levels were observed that likely coordinate photosynthesis and prevent oxidative damage during cold exposure. In addition, vernalization induced a stable accumulation of H3K27me3 over genes encoding many development-related transcription factors, which resulted in either inhibition of transcription or a bivalent status of the genes. Lastly, FLC-like and VIN3-like genes were identified that appear to be novel components of the vernalization pathway.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.