Evidence map›Paper›PMID 32410571›Full record

ArticleBMC genomics2020

Decoupling behavioral and transcriptional responses to color in an eyeless cnidarian.

Whitney B Leach, Adam M Reitzel

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
5.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Circadian rhythms: pervasive, and often times evasive.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  3. Article
  4. Article
  5. Larval swimming in the sea anemoneEcology and evolution · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Associative learning in the cnidarianProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Designed Multifunctional Peptides for Intracellular Targets.Antibiotics (Basel, Switzerland) · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Whitney B LeachDepartment of Biological Sciences, University of North Carolina at Charlotte, 9201 University City Blvd, Woodward Hall, Room 381A, Charlotte, NC, 28223, USA. wroger11@uncc.edu.ORCID http://orcid.org/0000-0002-3418-5483
Adam M ReitzelDepartment of Biological Sciences, University of North Carolina at Charlotte, 9201 University City Blvd, Woodward Hall, Room 381A, Charlotte, NC, 28223, USA.
University of North Carolina at Charlotte · US

Funding

bZIP Protein Function in an Organismal Model for Peripheral Circadian ClocksR15GM114740 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI REITZEL, ADAM MICHAEL · 2015 to 2015
$324k
NIGMS NIH HHS R15 GM114740NIH HHS R15GM114740
6 · The paper itself

Abstract

backgroundAnimals have specific molecular, physiological, and behavioral responses to light that are influenced by wavelength and intensity. Predictable environmental changes - predominantly solar and lunar cycles - drive endogenous daily oscillations by setting internal pacemakers, otherwise known as the circadian clock. Cnidarians have been a focal group to discern the evolution of light responsiveness due to their phylogenetic position as a sister phylum to bilaterians and broad range of light-responsive behaviors and physiology. Marine species that occupy a range of depths will experience different ranges of wavelengths and light intensities, which may result in variable phenotypic responses. Here, we utilize the eyeless sea anemone Nematostella vectensis, an estuarine anemone that typically resides in shallow water habitats, to compare behavioral and molecular responses when exposed to different light conditions.

resultsQuantitative measures of locomotion clearly showed that this species responds to light in the blue and green spectral range with a circadian activity profile, in contrast to a circatidal activity profile in the red spectral range and in constant darkness. Differences in average day/night locomotion was significant in each condition, with overall peak activity during the dark period. Comparative analyses of 96 transcriptomes from individuals sampled every 4 h in each lighting treatment revealed complex differences in gene expression between colors, including in many of the genes likely involved in the cnidarian circadian clock. Transcriptional profiling showed the majority of genes are differentially expressed when comparing mid-day with mid-night, and mostly in red light. Gene expression profiles were largely unique in each color, although animals in blue and green were overall more similar to each other than to red light.

conclusionsTogether, these analyses support the hypothesis that cnidarians are sensitive to red light, and this perception results in a rich transcriptional and divergent behavioral response. Future work determining the specific molecular mechanisms driving the circadian and potential circatidal rhythms measured here would be impactful to connect gene expression variation with behavioral variation in this eyeless species.

Indexed as

PhotoperiodAnimalsCircadian ClocksCircadian Rhythm Signaling Peptides and ProteinsColorDarknessFemaleGene Expression RegulationLocomotionPigments, BiologicalSea AnemonesTranscriptomeCircadian Rhythm Signaling Peptides and ProteinsPigments, BiologicalBehaviorGene expressionNematostellaPhotoperiodTranscriptomics

Identifiers

PMID32410571
PMCPMC7222589
OpenAlexW3027246842

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.