Evidence map›Paper›PMID 32410296›Full record

ArticleJournal of clinical laboratory analysis2020

A molecular-beacon-based asymmetric PCR assay for detecting polymorphisms related to folate metabolism.

Qi Peng, Shengbin Liao, Yuejing He, Liyun Liang, Xiaohua Su, Chunbao Rao, Wenrui Li, Siping Li, Xiaomei Lu

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Qi PengDepartment of Medical and Molecular Genetics, Dongguan Institute of Pediatrics, Dongguan, China.
Shengbin LiaoShenzhen Yilifang Biological Co., Ltd., Shenzhen, China.
Yuejing HeMedical Laboratory, Dongguan Eighth People's Hospital, Dongguan, China.
Liyun LiangMedical Laboratory, Dongguan Eighth People's Hospital, Dongguan, China.
Xiaohua SuMedical Laboratory, Dongguan Eighth People's Hospital, Dongguan, China.
Chunbao RaoDepartment of Medical and Molecular Genetics, Dongguan Institute of Pediatrics, Dongguan, China.ORCID https://orcid.org/0000-0002-1065-3158
Wenrui LiMedical Laboratory, Dongguan Eighth People's Hospital, Dongguan, China.
Siping LiDepartment of Medical and Molecular Genetics, Dongguan Institute of Pediatrics, Dongguan, China.
Xiaomei LuDepartment of Medical and Molecular Genetics, Dongguan Institute of Pediatrics, Dongguan, China.ORCID https://orcid.org/0000-0001-5454-1548
Dongguan People’s Hospital · CN

Funding

The Key Projects of Science and Technology Plan of Dongguan 2017507150100445The Key Projects of Science and Technology Plan of Dongguan 20185071501001627The Key Projects of Science and Technology Plan of Dongguan 20185071501001628
6 · The paper itself

Abstract

backgroundPolymorphisms (rs1801133 or C677T; rs1801131 or A1298C) of the MTHFR gene and rs1801394 (A66G) of the MTRR gene are important genetic determinants of folate metabolism. A convenient, sensitive, and reliable method is required to detect polymorphisms for the precise supplementation of folate.

methodsA rapid detection method based on molecular beacon probes that can detect rs1801133, rs1801131, and rs1801394 simultaneously was developed in this study. Specific primers and probes were designed, and the amplification system and conditions were optimized. We applied our method to a group of 500 unrelated women of gestational age in the Dongguan region of Guangdong Province in China. The clinical performance of this assay was evaluated by testing 94 samples in comparison with Sanger sequencing.

resultsThe molecular-beacon-based PCR assay we established is extremely sensitive, with a detection limit of 2 ng/μL of genomic DNA, and validated by direct sequencing in a blind study with 100% concordance.

conclusionThe results demonstrate that our molecular-beacon-based asymmetric PCR assay is an easy, reliable, high-yield, and cost-effective method for the simultaneous detection of three polymorphisms related to folate metabolism. It could help evaluate the risk of perinatal-neonatal neural tube malformation, pregnancy hypertension, and other diseases and guide the individualized supplementation of folic acid. Data on the spectrum of mutations in the Dongguan District in this study are beneficial for guiding the supplementation of folic acid.

Indexed as

Folic AcidAdultFemaleFerredoxin-NADP ReductaseGenotypeHumansLimit of DetectionMethylenetetrahydrofolate Reductase (NADPH2)MutationPolymerase Chain ReactionPolymorphism, GeneticReproducibility of ResultsSequence Analysis, DNAYoung AdultFerredoxin-NADP ReductaseFolic Acidmethionine synthase reductaseMethylenetetrahydrofolate Reductase (NADPH2)MTHFR protein, humanfolate metabolismmolecular-beaconMTHFRMTRRpolymorphism

Identifiers

PMID32410296
PMCPMC7439423
OpenAlexW3025855733

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.