Evidence map›Paper›PMID 32407774›Full record

ArticleBiochimica et biophysica acta. Biomembranes2020

A machine learning approach to estimation of phase diagrams for three-component lipid mixtures.

Mohammadreza Aghaaminiha, Sara Akbar Ghanadian, Ehsan Ahmadi, Amir M Farnoud

Abstract read
In one paragraph

Article in Biochimica et biophysica acta. Biomembranes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Can Machine Learning Predict the Phase Behavior of Surfactants?The journal of physical chemistry. B · 2023
    Article
  5. Laurdan Discerns Lipid Membrane Hydration and Cholesterol Content.The journal of physical chemistry. B · 2023
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Mohammadreza AghaaminihaDepartment of Chemical and Biomolecular Engineering, Russ College of Engineering and Technology, Ohio University, Athens, OH 45701, USA.
Sara Akbar GhanadianDepartment of Industrial and Systems Engineering, Russ College of Engineering and Technology, Ohio University, Athens, OH 45701, USA.
Ehsan AhmadiDepartment of Business, School of Business and Leadership, Our Lady of the Lake University, San Antonio, TX 78207, USA. Electronic address: eahmadi@ollusa.edu.
Amir M FarnoudDepartment of Chemical and Biomolecular Engineering, Russ College of Engineering and Technology, Ohio University, Athens, OH 45701, USA. Electronic address: farnoud@ohio.edu.

Funding

Interactions of Engineered Nanomaterials with the Cell Plasma MembraneR15ES030140 · NIEHS · OHIO UNIVERSITY ATHENS · PI BURDICK, MONICA MAKI · 2019 to 2019
$429k
NIEHS NIH HHS R15 ES030140
6 · The paper itself

Abstract

The plasma membrane of eukaryotic cells is commonly believed to contain ordered lipid domains. The interest in understanding the origin of such domains has led to extensive studies on the phase behavior of mixed lipid systems. Three-component phase diagrams, composed of a high melting temperature (Tm) lipid, cholesterol, and a low Tm lipid have been valuable in studying lipid phase behavior. However, developing phase diagrams over the entire composition space and with precise tie-lines requires significant experimental effort. In this study, a machine learning approach was used to predict the Tm of lipids and generate phase diagrams from lipid mixtures. First, artificial neural network (ANN) was used for the prediction of Tm. The network was trained using available Tm data and was able to generate Tm values that closely matched literature results for its testing dataset. This model was then used to predict the Tm for lipids that have not yet been experimentally tested. Then, random forests (RF) and support vector machines (SVM) were trained and tested for their ability to predict a test three-component phase diagram. The model from the RF algorithm was able to generate a diagram that closely matched published results. This model was then used to generate phase diagrams for lipid mixtures at various temperatures and various degrees of unsaturation. This machine learning approach to the generation of lipid phase diagrams has the potential to save significant time and resources in studies of lipid phase behavior.

Indexed as

Machine LearningCell MembraneCholesterolLipid BilayersLipidsTemperatureCholesterolLipid BilayersLipidsLipidsMachine learningMelting temperatureMembranesPhase diagram

Identifiers

PMID32407774
PMCPMC7301216

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.