Evidence map›Paper›PMID 32406048›Full record

ArticleMolecular diagnosis & therapy2020

Performance Characteristics of a Real-Time Polymerase Chain Reaction Assay for the Detection of Epidermal Growth Factor Receptor (EGFR) Mutations in Plasma Samples of Non-Small Cell Lung Cancer (NSCLC) Patients.

Patrick O'Donnell, Theresa May, Kelli DeMartin, Jane Ferguson, Harkanwal Halait, Wen Wei, Karen Yu, Sid Scudder

Abstract read
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In one paragraph

Article in Molecular diagnosis & therapy, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Patrick O'DonnellRoche Molecular Systems, 4300 Hacienda Drive, Pleasanton, CA, 94588, USA. Patrick.odonnell@roche.com.
Theresa MayRoche Molecular Systems, 4300 Hacienda Drive, Pleasanton, CA, 94588, USA.
Kelli DeMartinRoche Molecular Systems, 4300 Hacienda Drive, Pleasanton, CA, 94588, USA.
Jane FergusonThermo Fisher Scientific, 46500 Kato Road, Fremont, CA, 94538, USA.
Harkanwal HalaitRoche Molecular Systems, 4300 Hacienda Drive, Pleasanton, CA, 94588, USA.
Wen WeiRoche Molecular Systems, 4300 Hacienda Drive, Pleasanton, CA, 94588, USA.
Karen YuRoche Molecular Systems, 4300 Hacienda Drive, Pleasanton, CA, 94588, USA.
Sid ScudderRoche Molecular Systems, 4300 Hacienda Drive, Pleasanton, CA, 94588, USA.
Materials Systems (United States) · USThermo Fisher Scientific (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCirculating free DNA in plasma is an alternative source of tumor-derived DNA that can be a surrogate for tissue epidermal growth factor receptor (EGFR) testing.

objectiveWe evaluated the analytical performance of the cobas

methodsWe used K2-ethylenediaminetetraacetic acid plasma samples from NSCLC patients and healthy donors (HDs), along with cell line DNA. Results from a complete technical performance evaluation are described, including a comparison between NSCLC and HD plasma to support the use of surrogate samples and an independent confirmation of the limit of detection (LoD).

resultsThe cobas test reported an overall percent agreement of approximately 88% for plasma samples when compared with a next-generation sequencing method. The LoD for all EGFR mutations was ≤ 100 copies/mL for plasma samples. An external study confirmed the LoD for exon 19 deletion, L858R, and T790M at ≤ 100 copies/mL using samples derived from NSCLC patient specimens. The cobas test showed linearity between at least 50 and 10,000 copies/mL for plasma samples. An internal repeatability study reported a correct call accuracy of 99.2% for plasma samples. The performance of the cobas test is equivalent when using sheared or intact cell line DNA diluted into either HD plasma or NSCLC patient plasma.

conclusionsThe cobas test is a sensitive, robust, and accurate assay that delivers reproducible results.

Indexed as

Carcinoma, Non-Small-Cell LungCell Line, TumorDNA Mutational AnalysisDNA, NeoplasmErbB ReceptorsHigh-Throughput Nucleotide SequencingHumansLung NeoplasmsMutationPlasmaReal-Time Polymerase Chain ReactionReproducibility of ResultsDNA, NeoplasmEGFR protein, humanErbB Receptors

Identifiers

PMID32406048
OpenAlexW3024384919

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.