Evidence map›Paper›PMID 32405588›Full record

ArticleKidney international reports2020

A Precision Medicine Approach Uncovers a Unique Signature of Neutrophils in Patients With Brushite Kidney Stones.

Mohammad Shahidul Makki, Seth Winfree, James E Lingeman, Frank A Witzmann, Elaine M Worcester, Amy E Krambeck, Fredric L Coe, Andrew P Evan, Sharon Bledsoe, Kristin J Bergsland and 4 more

Open access · goldAbstract read
In one paragraph

Article in Kidney international reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 28 citations in OpenAlex.

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  11. Precision Medicine in Nephrology: An Integrative Framework of Multidimensional Data in the Kidney Precision Medicine Project.American journal of kidney diseases : the official journal of the National Kidney Foundation · 2024
    Article
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  18. Large-scale, three-dimensional tissue cytometry of the human kidney: a complete and accessible pipeline.Laboratory investigation; a journal of technical methods and pathology · 2021
    Article
  19. The Indiana O'Brien Center for Advanced Renal Microscopic Analysis.American journal of physiology. Renal physiology · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Mohammad Shahidul MakkiDepartment of Medicine, Division of Nephrology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Seth WinfreeDepartment of Medicine, Division of Nephrology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
James E LingemanDepartment of Urology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Frank A WitzmannDepartment of Cellular & Integrative Physiology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Elaine M WorcesterDepartment of Medicine, Division of Nephrology, University of Chicago, Chicago, Illinois, USA.
Amy E KrambeckDepartment of Urology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Fredric L CoeDepartment of Medicine, Division of Nephrology, University of Chicago, Chicago, Illinois, USA.
Andrew P EvanDepartment of Anatomy and Cell Biology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Sharon BledsoeDepartment of Anatomy and Cell Biology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Kristin J BergslandDepartment of Medicine, Division of Nephrology, University of Chicago, Chicago, Illinois, USA.
Suraj KhochareDepartment of Medicine, Division of Nephrology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Daria BarwinskaDepartment of Medicine, Division of Nephrology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
James C WilliamsDepartment of Anatomy and Cell Biology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Tarek M El-AchkarDepartment of Medicine, Division of Nephrology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Indiana University School of MedicineIndiana University – Purdue University Indianapolis · USUniversity of Chicago · US

Funding

STONE FORMATION IN GENETIC HYPERCALCIURIAP01DK056788 · NIDDK · UNIVERSITY OF CHICAGO · PI ASHKAR, TAREK MAURICE · 2000 to 2021
$22.5M
PROBE DELIVERY COREP30DK079312 · NIDDK · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI MOLITORIS, BRUCE A · 2007 to 2021
$17.1M
SkyScan 1176 Micro CT SystemS10OD016208 · OD · INDIANA UNIVERSITY INDIANAPOLIS · PI WILLIAMS, JAMES C · 2014 to 2014
$383k
NIDDK NIH HHS P01 DK056788NIDDK NIH HHS P30 DK079312NIH HHS S10 OD016208
6 · The paper itself

Abstract

introductionWe have previously found that papillary histopathology differs greatly between calcium oxalate and brushite stone formers (SF); the latter have much more papillary mineral deposition, tubular cell injury, and tissue fibrosis.

methodsIn this study, we applied unbiased orthogonal

resultsBrushite SF did not differ from CaOx SF with respect to metabolic risk factors for stones but did exhibit increased tubule plugging in their papillae. Brushite SF had upregulation of inflammatory pathways in papillary tissue and increased neutrophil markers in stone matrix compared with those with CaOx stones. Large-scale 3-dimensional tissue cytometry on renal papillary biopsies showed an increase in the number and density of neutrophils in the papillae of patients with brushite versus CaOx, thereby linking the observed inflammatory signatures to the neutrophils in the tissue. To explain how neutrophil proteins appear in the stone matrix, we measured neutrophil extracellular trap (NET) formation-NETosis-and found it significantly increased in the papillae of patients with brushite stones compared with CaOx stones.

conclusionWe show that increased neutrophil infiltration and NETosis is an unrecognized factor that differentiates brushite and CaOx SF and may explain the markedly increased scarring and inflammation seen in the papillae of patients with brushite stones. Given the increasing prevalence of brushite stones, the role of neutrophil activation in brushite stone formation requires further study.

Indexed as

kidney stonesnephrolithiasisneutrophil extracellular trap

Identifiers

PMID32405588
PMCPMC7210605
OpenAlexW3006771367

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.