ArticleNature protocols2020
Reproducible molecular networking of untargeted mass spectrometry data using GNPS.
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Article in Nature protocols, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 326 papers.
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326citing papers in PubMed
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Who cites it
326 citing papers in PubMed.
- eCOMET: an R package for evaluating metabolic diversity and enrichment from LC-MS/MS data to test ecological hypotheses from individuals to ecosystems.The New phytologist · 2026Article
- Siderophore-metal complexes in Paraburkholderia phymatum: structure elucidation of phymabactin.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2026Article
- Computational metabolomics at scale: from open data to insight.Current opinion in biotechnology · 2026Review
- Environmental Contaminants in Surface Snow Samples Made from Reclaimed Water at a Ski Resort: A Mass Spectrometry Analysis.ACS environmental Au · 2026Article
- Novel Phenanthraquinone Derivative from Antarctic LichenACS omega · 2026Article
- Integrated GNPS Molecular Networking and Network Pharmacology Uncover Methylophiopogonanone B as a Novel Anti-Inflammatory Agent From Polygonatum cyrtonema Hua Targeting the SRC-PI3K-Akt Pathway.Biomedical chromatography : BMC · 2026Article
- Metabolomic Profiling of Medicinal Plant-Based Soft Porridge and Evaluation of Cytotoxicity.Metabolites · 2026Article
- Comparative Whole-Genome Sequence Analysis ofJournal of fungi (Basel, Switzerland) · 2026Article
- A Two-Step Prioritization Framework for the Nontargeted LC-HRMS Analysis of Chemicals of Environmental Concern and Byproducts during Drinking Water Production.ACS measurement science au · 2026Article
- PyCompound: An Open-Source Python Package for Spectral-Library Matching in Mass Spectrometry-Based Metabolomics.Metabolites · 2026Article
- Antarctic Marine-Derived Fungi: Metabolomic Signatures and Antibiofilm-Driven Anti-Infective Potential Against Drug Resistant Pathogens.Marine drugs · 2026Article
- Analysis of the Chemical Composition ofMolecules (Basel, Switzerland) · 2026Article
- Functional diversity and ecological consequences of endophytic Bacillus-plant interactions.Folia microbiologica · 2026Review
- Ordering molecular diversity in untargeted metabolomics via molecular community networking.Cell reports methods · 2026Article
- A historical journey of metabolite-protein interaction discovery: from data harmonization to AI-driven prediction.Briefings in bioinformatics · 2026Review
- Prime editing for precise genome engineering and modulation of fungal metabolism.Nature biotechnology · 2026Article
- Mass spectrometry-based metabolomics approaches to interrogate host-microbiome interactions in mammalian systems.Natural product reports · 2026Review
- Characterization of Atrasentan Metabolic Pathway in Human Liver Microsomes Using Feature-Based Molecular Networking.Pharmaceutics · 2026Article
- Chemical Profiling of Aboveground and Underground Parts ofMolecules (Basel, Switzerland) · 2026Article
- A lipidomics roadmap: from basic research to societal challenges.Nature communications · 2026Review
266 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
42 authors.
Allegra T Aron *Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
Emily C Gentry *Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
Kerry L McPhail *Department of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, OR, USA.
Louis-Félix NothiasSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
Mélissa Nothias-EspositoSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
Amina BouslimaniSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
Daniel PetrasSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-6561-3022
Julia M GauglitzSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
Nicole SikoraSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
Fernando VargasSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-5847-2439
Justin J J van der HooftBioinformatics Group, Wageningen University, Wageningen, the Netherlands.ORCID http://orcid.org/0000-0002-9340-5511
Madeleine ErnstSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
Kyo Bin KangCollege of Pharmacy, Sookmyung Women's University, Seoul, Korea.ORCID http://orcid.org/0000-0003-3290-1017
Christine M AcevesSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
Andrés Mauricio Caraballo-RodríguezSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-5499-2728
Irina KoesterSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
Kelly C WeldonSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-1064-8153
Samuel BertrandGroupe Mer, Molécules, Santé-EA 2160, UFR des Sciences Pharmaceutiques et Biologiques, Université de Nantes, Nantes, France.ORCID http://orcid.org/0000-0002-5934-7012
Catherine RoullierCollege of Pharmacy, Sookmyung Women's University, Seoul, Korea.ORCID http://orcid.org/0000-0001-6486-6821
Kunyang SunSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
Richard M TehanDepartment of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, OR, USA.
Cristopher A Boya PCentro de Biodiversidad y Descubrimiento de Drogas, Instituto de Investigaciones Científicas y Servicios de Alta Tecnología (INDICASAT AIP), Panama City, Panama.ORCID http://orcid.org/0000-0002-8093-596X
Martin H ChristianCentro de Biodiversidad y Descubrimiento de Drogas, Instituto de Investigaciones Científicas y Servicios de Alta Tecnología (INDICASAT AIP), Panama City, Panama.
Marcelino GutiérrezCentro de Biodiversidad y Descubrimiento de Drogas, Instituto de Investigaciones Científicas y Servicios de Alta Tecnología (INDICASAT AIP), Panama City, Panama.
Aldo Moreno UlloaBiomedical Innovation Department, CICESE, Ensenada, Mexico.
Javier Andres Tejeda MoraBiomedical Innovation Department, CICESE, Ensenada, Mexico.
Randy Mojica-FloresCentro de Biodiversidad y Descubrimiento de Drogas, Instituto de Investigaciones Científicas y Servicios de Alta Tecnología (INDICASAT AIP), Panama City, Panama.ORCID http://orcid.org/0000-0003-4514-3083
Johant Lakey-BeitiaCentro de Biodiversidad y Descubrimiento de Drogas, Instituto de Investigaciones Científicas y Servicios de Alta Tecnología (INDICASAT AIP), Panama City, Panama.
Victor Vásquez-ChavesCentro de Investigaciones en Productos Naturales (CIPRONA), Universidad de Costa Rica, San José, Costa Rica.
Yilue ZhangDepartment of Drug Discovery and Development, Harrison School of Pharmacy, Auburn University, Auburn, AL, USA.
Angela I CalderónDepartment of Drug Discovery and Development, Harrison School of Pharmacy, Auburn University, Auburn, AL, USA.
Nicole TaylerCentro de Biodiversidad y Descubrimiento de Drogas, Instituto de Investigaciones Científicas y Servicios de Alta Tecnología (INDICASAT AIP), Panama City, Panama.ORCID http://orcid.org/0000-0003-4431-6464
Robert A KeyzersSchool of Chemical & Physical Sciences, Victoria University of Wellington, Wellington, New Zealand.
Fidele TugizimanaCentre for Plant Metabolomics Research, Department of Biochemistry, University of Johannesburg, Auckland Park, South Africa.ORCID http://orcid.org/0000-0001-8172-6599
Nombuso NdlovuCentre for Plant Metabolomics Research, Department of Biochemistry, University of Johannesburg, Auckland Park, South Africa.
Alexander A AksenovSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-9445-2248
Alan K JarmuschSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-2228-6308
Robin SchmidInstitute of Inorganic and Analytical Chemistry, University of Münster, Münster, Germany.
Andrew W TrumanDepartment of Molecular Microbiology, John Innes Centre, Norwich, UK.ORCID http://orcid.org/0000-0001-5453-7485
Nuno BandeiraDepartment of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, USA. nbandeira@ucsd.edu.
Mingxun WangSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA. miw023@ucsd.edu.ORCID http://orcid.org/0000-0001-7647-6097
Pieter C DorresteinSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA. pdorrestein@ucsd.edu.ORCID http://orcid.org/0000-0002-3003-1030
Funding
TrainingP41GM103484 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BANDEIRA, NUNO · 2012 to 2018
$8.7MSynapt ion mobility mass spectrometerS10RR029121 · NCRR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DORRESTEIN, PIETER C · 2011 to 2011
$802kNatural Product Drug Discovery from South African Tunicates by Leveraging International Training OpportunitiesR15GM122016 · NIGMS · OREGON STATE UNIVERSITY · PI MCPHAIL, KERRY LEIGH · 2017 to 2017
$405kReuse of Public Metabolomics DataR03CA211211 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DORRESTEIN, PIETER C · 2016 to 2016
$155kBiotechnology and Biological Sciences Research Council BBS/E/J/000PR9790NCI NIH HHS R03 CA211211NIGMS NIH HHS P41 GM103484NIGMS NIH HHS R15 GM122016
Abstract
Global Natural Product Social Molecular Networking (GNPS) is an interactive online small molecule-focused tandem mass spectrometry (MS
Indexed as
AnimalsChromatography, LiquidHumansMetabolic Networks and PathwaysMetabolomicsMiceReproducibility of ResultsSoftwareTandem Mass SpectrometryWorkflow
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32405051What OpenQuestion holds
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.