Evidence map›Paper›PMID 32404017›Full record

ArticleGut microbes2020

Rotavirus infection induces glycan availability to promote ileum-specific changes in the microbiome aiding rotavirus virulence.

Melinda A Engevik, Lori D Banks, Kristen A Engevik, Alexandra L Chang-Graham, Jacob L Perry, Diane S Hutchinson, Nadim J Ajami, Joseph F Petrosino, Joseph M Hyser

Open access · goldAbstract read
In one paragraph

Article in Gut microbes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
1.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 80 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Melinda A EngevikDepartment of Pathology & Immunology, Baylor College of Medicine , Houston, TX, USA.ORCID 0000-0002-9742-9932
Lori D BanksAlkek Center for Metagenomic and Microbiome Research, Baylor College of Medicine , Houston, TX, USA.ORCID 0000-0003-4684-8763
Kristen A EngevikAlkek Center for Metagenomic and Microbiome Research, Baylor College of Medicine , Houston, TX, USA.ORCID 0000-0001-9807-1875
Alexandra L Chang-GrahamAlkek Center for Metagenomic and Microbiome Research, Baylor College of Medicine , Houston, TX, USA.ORCID 0000-0002-3403-6787
Jacob L PerryAlkek Center for Metagenomic and Microbiome Research, Baylor College of Medicine , Houston, TX, USA.ORCID 0000-0002-0630-9266
Diane S HutchinsonAlkek Center for Metagenomic and Microbiome Research, Baylor College of Medicine , Houston, TX, USA.
Nadim J AjamiAlkek Center for Metagenomic and Microbiome Research, Baylor College of Medicine , Houston, TX, USA.
Joseph F PetrosinoAlkek Center for Metagenomic and Microbiome Research, Baylor College of Medicine , Houston, TX, USA.
Joseph M HyserAlkek Center for Metagenomic and Microbiome Research, Baylor College of Medicine , Houston, TX, USA.
Baylor College of Medicine · US

Funding

The Maine Biomedical Research Network (INBRE)P20GM103423 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI Frederic Xavier Bonnet · 2012 to 2026
$60.0M
Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI James Versalovic · 2001 to 2026
$28.3M
Proteomics CoreP30DK123704 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI DON C. ROCKEY · 2020 to 2026
$8.8M
Research Training in Pediatrics GastroenterolgyT32DK007664 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI DOUGLAS G BURRIN · 1991 to 2026
$8.4M
Research Education and Career Horizons ProgramK12GM084897 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI SIFERS, RICHARD NORMAN, SLAUGHTER, GAYLE · 2008 to 2016
$8.3M
Training Supplement in Enteric Virus Exploitation of Calcium SignalingR01DK115507 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI Joseph M. Hyser · 2018 to 2026
$5.0M
Enteric Calicivirus Viroporin-Mediated Calcium SignalingR21AI137710 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI FARKAS, TIBOR, HYSER, JOSEPH M. · 2019 to 2020
$441k
Regulation of Enteric Virus Secretory DiarrheaR03DK110270 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI HYSER, JOSEPH M. · 2017 to 2018
$159k
Regulation of secretory diarrhea by ER-PM junction signalingF30DK112563 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI CHANG-GRAHAM, ALEXANDRA · 2017 to 2019
$128k
NIAID NIH HHS R21 AI137710NIDDK NIH HHS F30 DK112563NIDDK NIH HHS P30 DK056338NIDDK NIH HHS P30 DK123704NIDDK NIH HHS R01 DK115507NIDDK NIH HHS R03 DK110270NIDDK NIH HHS T32 DK007664NIGMS NIH HHS K12 GM084897NIGMS NIH HHS P20 GM103423
6 · The paper itself

Abstract

Multiple studies have identified changes within the gut microbiome in response to diarrheal-inducing bacterial pathogens. However, examination of the microbiome in response to viral pathogens remains understudied. Compounding this, many studies use fecal samples to assess microbiome composition; which may not accurately mirror changes within the small intestine, the primary site for most enteric virus infections. As a result, the functional significance of small intestinal microbiome shifts during infection is not well defined. To address these gaps, rotavirus-infected neonatal mice were examined for changes in bacterial community dynamics, host gene expression, and tissue recovery during infection. Profiling bacterial communities using 16S rRNA sequencing suggested significant and distinct changes in ileal communities in response to rotavirus infection, with no significant changes for other gastrointestinal (GI) compartments. At 1-d post-infection, we observed a loss in

Indexed as

Gastrointestinal MicrobiomeAkkermansiaAnimalsAnimals, NewbornBacteriaBacteroidesGoblet CellsIleumIntestine, SmallLactobacillusMiceMice, Inbred BALB CMucinsPolysaccharidesRNA, Ribosomal, 16SRotavirusMucinsPolysaccharidesRNA, Ribosomal, 16SAkkermansiaBacteroidesglycansmicrobiomeMuc2mucusRotavirus

Identifiers

PMID32404017
PMCPMC7524290
OpenAlexW3024782071

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.