Evidence map›Paper›PMID 32400113›Full record

ArticleMolecular genetics & genomic medicine2020

Novel mutations in the PITX2 gene in Pakistani and Mexican families with Axenfeld-Rieger syndrome.

Valeria Lo Faro, Sorath N Siddiqui, Muhammad I Khan, Cristina Villanueva-Mendoza, Vianney Cortés-González, Nomdo Jansonius, Arthur A B Bergen, Shazia Micheal

Open access · goldAbstract readCase Reports
In one paragraph

Article in Molecular genetics & genomic medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Valeria Lo FaroDepartment of Clinical Genetics, University Medical Center (UMC), University of Amsterdam (UvA), Amsterdam, The Netherlands.ORCID 0000-0003-4931-7327
Sorath N SiddiquiDepartment of Pediatric Ophthalmology and Strabismus, Al-Shifa Eye Trust Hospital, Rawalpindi, Pakistan.
Muhammad I KhanDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud UMC, Nijmegen, The Netherlands.
Cristina Villanueva-MendozaDepartment of Genetics, Asociación Para Evitar la Ceguera en México, México, México.
Vianney Cortés-GonzálezDepartment of Genetics, Asociación Para Evitar la Ceguera en México, México, México.
Nomdo JansoniusDepartment of Ophthalmology, University Medical Center Groningen (UMCG), University of Groningen (RUG), Groningen, The Netherlands.
Arthur A B BergenDepartment of Clinical Genetics, University Medical Center (UMC), University of Amsterdam (UvA), Amsterdam, The Netherlands.
Shazia MichealDepartment of Clinical Genetics, University Medical Center (UMC), University of Amsterdam (UvA), Amsterdam, The Netherlands.
University Medical Center Groningen · NLDar Al-Shifa Hospital · PSNetherlands Institute for Neuroscience · NLRadboud University Nijmegen · NLUniversity of Amsterdam · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeAxenfeld-Rieger syndrome (ARS) is a rare autosomal dominant disorder that affects the anterior segment of the eye. The aim of this study was to examine the PITX2 gene to identify possible novel mutations in Pakistani and Mexican families affected by the ARS phenotype.

methodsThree unrelated probands with a diagnosis of ARS were recruited for this study. Genomic DNA was isolated from the peripheral blood of the probands and their family members. Polymerase chain reaction and Sanger sequencing were used for the analysis of coding exons and the flanking intronic regions of the PITX2 gene. Bioinformatics tools and database (VarSome, Provean, and MutationTaster, SIFT, PolyPhen-2, and HOPE) were evaluated to explore missense variants.

resultsWe identified novel heterozygous variations in the PITX2 gene that segregated with the ARS phenotype within the families. The variant NM_153426.2(PITX2):c.226G > T or p.(Ala76Ser) and the mutation NM_153426.2(PITX2):c.455G > A or p.(Cys152Tyr) were identified in two Pakistani pedigrees, and the mutation NM_153426.2(PITX2):c.242_265del or p.(Lys81_Gln88del), segregated in a Mexican family.

conclusionOur study extends the spectrum of PITX2 mutations in individuals with ARS, enabling an improved diagnosis of this rare but serious syndrome.

Indexed as

MutationAdolescentAnterior Eye SegmentChildEye AbnormalitiesEye Diseases, HereditaryFemaleHeterozygoteHomeobox Protein PITX2Homeodomain ProteinsHumansMalePedigreeTranscription FactorsHomeobox Protein PITX2Homeodomain ProteinsTranscription Factorsanterior segment dysgenesisAxenfeld-RiegermutationsPITX2

Identifiers

PMID32400113
PMCPMC7336731
OpenAlexW3025984708

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.