Evidence map›Paper›PMID 32399606›Full record

ArticleUrolithiasis2020

Are conventional stone analysis techniques reliable for the identification of 2,8-dihydroxyadenine kidney stones? A case series.

Hrafnhildur L Runolfsdottir, Tzu-Ling Lin, David S Goldfarb, John A Sayer, Mini Michael, David Ketteridge, Peter R Rich, Vidar O Edvardsson, Runolfur Palsson

Open access · greenAbstract read
In one paragraph

Article in Urolithiasis, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 4 countries.

Hrafnhildur L RunolfsdottirFaculty of Medicine, School of Health Sciences, University of Iceland, Reykjavik, Iceland.
Tzu-Ling LinDepartment of Renal Medicine, University College London, London, UK.
David S GoldfarbNephrology Section, VA New York Harbor Healthcare System, and Division of Nephrology, New York University Langone Medical Center, New York, NY, USA.
John A SayerRenal Services, The Newcastle Hospitals NHS Foundation Trust, Newcastle upon Tyne, UK.
Mini MichaelRenal Section, Department of Pediatrics, Texas Children's Hospital, and Baylor College of Medicine, Houston, TX, USA.
David KetteridgeDepartment of Genetics and Molecular Pathology, Women's and Children's Hospital, Adelaide, Australia.
Peter R RichDepartment of Structural and Molecular Biology, University College London, London, UK.
Vidar O EdvardssonFaculty of Medicine, School of Health Sciences, University of Iceland, Reykjavik, Iceland. vidare@lsh.is.
Runolfur PalssonFaculty of Medicine, School of Health Sciences, University of Iceland, Reykjavik, Iceland. runolfur@landspitali.is.
National University Hospital of Iceland · ISBaylor College of Medicine · USInstitute of Structural and Molecular Biology · GBNIHR Newcastle Biomedical Research Centre · GBUniversity College London · GBVA NY Harbor Healthcare System · USWomen's and Children's Hospital · AU

Funding

Primary HyperoxaluriaU54DK083908 · NIDDK · MAYO CLINIC ROCHESTER · PI MILLINER, DAWN SCHMAUTZ · 2009 to 2018
$12.3M
NIDDK NIH HHS U54 DK083908NIDDK NIH HHS U54DK083908
6 · The paper itself

Abstract

We have recently encountered patients incorrectly diagnosed with adenine phosphoribosyltransferase (APRT) deficiency due to misidentification of kidney stones as 2,8-dihydroxyadenine (DHA) stones. The objective of this study was to examine the accuracy of stone analysis for identification of DHA. Medical records of patients referred to the APRT Deficiency Research Program of the Rare Kidney Stone Consortium in 2010-2018 with a diagnosis of APRT deficiency based on kidney stone analysis were reviewed. The diagnosis was verified by measurement of APRT enzyme activity or genetic testing. Attenuated total reflection-Fourier transform infrared (ATR-FTIR) spectra of pure crystalline DHA and a kidney stone obtained from one of the confirmed APRT deficiency cases were generated. The ATR-FTIR spectrum of the kidney stone matched the crystalline DHA spectrum and was used for comparison with available infrared spectra of stone samples from the patients. Of 17 patients referred, 14 had sufficient data available to be included in the study. In all 14 cases, the stone analysis had been performed by FTIR spectroscopy. The diagnosis of APRT deficiency was confirmed in seven cases and rejected in the remaining seven cases. Comparison of the ATR-FTIR spectrum of the DHA stone with the FTIR spectra from three patients who did not have APRT deficiency showed no indication of DHA as a stone component. Misidentification of DHA as a kidney stone component by clinical laboratories appears common among patients referred to our program. Since current clinical protocols used to interpret infrared spectra for stone analysis cannot be considered reliable for the identification of DHA stones, the diagnosis of APRT deficiency must be confirmed by other methods.

Indexed as

AdenineAdenine PhosphoribosyltransferaseAdolescentAdultChildChild, PreschoolFemaleHumansKidney CalculiMaleMetabolism, Inborn ErrorsMiddle AgedReproducibility of ResultsRetrospective StudiesUrolithiasisYoung Adult2,8-dihydroxyadenineAdenineAdenine PhosphoribosyltransferaseAPRT deficiencyInfrared spectroscopyKidney stone compositionMisdiagnosisNephrolithiasis

Identifiers

PMID32399606
PMCPMC7395965
OpenAlexW3019087330

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.