ArticleProceedings of the National Academy of Sciences of the United States of America2020
A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice.
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Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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8citing papers in PubMed
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Who cites it
8 citing papers in PubMed.
- Structure-based prediction of protein-protein interaction network in rice.Genetics and molecular biology · 2024Article
- An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome.Genome biology · 2022Article
- A comprehensive SARS-CoV-2-human protein-protein interactome network identifies pathobiology and host-targeting therapies for COVID-19.Research square · 2022Article
- An interolog-based barley interactome as an integration framework for immune signaling.Genetics · 2022Article
- A rice protein interaction network reveals high centrality nodes and candidate pathogen effector targets.Computational and structural biotechnology journal · 2022Article
- Evolution-aided engineering of plant specialized metabolism.aBIOTECH · 2021Review
- Meeting at the DNA: Specifying Cytokinin Responses through Transcription Factor Complex Formation.Plants (Basel, Switzerland) · 2021Review
- Complex Networks of Prion-Like Proteins Reveal Cross Talk Between Stress and Memory Pathways in Plants.Frontiers in plant science · 2021Article
Corrections and comments
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Authors and funding
30 authors.
Shayne D WierbowskiDepartment of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853.ORCID 0000-0002-2595-2011
Tommy V VoWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853.
Pascal Falter-BraunInstitute of Network Biology, Helmholtz Zentrum München, German Research Center for Environmental Health, 85764 Munich, Germany.ORCID 0000-0003-2012-6746
Timothy O JobeBotanical Institute, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, 50674 Cologne, Germany.ORCID 0000-0002-5729-4981
Lars H KrusePlant Biology Section, School of Integrative Plant Sciences, Cornell University, Ithaca, NY 14853.ORCID 0000-0002-0449-092X
Xiaomu WeiDepartment of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853.
Jin LiangWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853.
Michael J MeyerDepartment of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853.
Nurten AkturkWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853.
Christen A Rivera-ErickWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853.
Nicolas A CorderoWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853.ORCID 0000-0002-6443-3089
Mauricio I ParamoWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853.ORCID 0000-0002-9518-1881
Elnur E ShayhidinWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853.
Marta BertolottiWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853.
Nathaniel D TippensDepartment of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853.ORCID 0000-0003-4377-8691
Kazi AktherSection of Plant Breeding and Genetics, School of Integrated Plant Sciences, Cornell University, Ithaca, NY 14853-1901.
Rita SharmaSchool of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
Yuichi KatayoseAdvanced Genomics Breeding Section, Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba, Ibaraki 305-8634, Japan.ORCID 0000-0002-4500-3964
Kourosh Salehi-AshtianiLaboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, 129188, Abu Dhabi, United Arab Emirates.ORCID 0000-0002-6521-5243
Tong HaoCenter for Cancer Systems Biology, Dana-Farber Cancer Institute, Boston, MA 02215.
Pamela C RonaldDepartment of Plant Pathology, University of California, Davis, CA 95616.ORCID 0000-0002-4107-1345
Joseph R EckerHoward Hughes Medical Institute, The Salk Institute for Biological Studies, La Jolla, CA 92037.ORCID 0000-0001-5799-5895
Peter A SchweitzerBRC Genomics Facility, Institute of Biotechnology, Cornell University, Ithaca, NY 14853.ORCID 0000-0003-4525-7013
Shoshi KikuchiPlant Genome Research Unit, Division of Genome and Biodiversity Research, Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba 305-0856, Japan.
Hiroshi MizunoDepartment of Molecular Biology, National Institute of Agrobiological Resources, Tsukuba 305-0856, Japan.
David E HillCenter for Cancer Systems Biology, Dana-Farber Cancer Institute, Boston, MA 02215.ORCID 0000-0001-5192-0921
Marc VidalCenter for Cancer Systems Biology, Dana-Farber Cancer Institute, Boston, MA 02215.
Gaurav D MoghePlant Biology Section, School of Integrative Plant Sciences, Cornell University, Ithaca, NY 14853.ORCID 0000-0002-8761-064X
Susan R McCouchSection of Plant Breeding and Genetics, School of Integrated Plant Sciences, Cornell University, Ithaca, NY 14853-1901; srm4@cornell.edu haiyuan.yu@cornell.edu.ORCID 0000-0001-9246-3106
Haiyuan YuDepartment of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853; srm4@cornell.edu haiyuan.yu@cornell.edu.ORCID 0000-0001-7597-6049
Funding
Integrated high-throughput functional assays to identify ulcerative colitis causal risk variantsR01DK115398 · NIDDK · CORNELL UNIVERSITY · PI KLEIN, ROBERT J., YU, HAIYUAN · 2018 to 2022
$3.3MQuantifying molecular consequences of human missense variants with large-scale interactome perturbation studiesR01GM125639 · NIGMS · CORNELL UNIVERSITY · PI ALEXOV, EMIL GEORGIEV, CLARK, ANDREW G · 2018 to 2021
$2.6MActivation of immune receptor signaling by a sulfated peptideR01GM122968 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI RONALD, PAMELA C · 2017 to 2020
$2.1MTowards a comprehensive multiscale 3D human interactome networkR01GM124559 · NIGMS · CORNELL UNIVERSITY · PI YU, HAIYUAN · 2017 to 2020
$1.5MHoward Hughes Medical InstituteNIDDK NIH HHS R01 DK115398NIGMS NIH HHS R01 GM122968NIGMS NIH HHS R01 GM124559NIGMS NIH HHS R01 GM125639
Abstract
Systematic mappings of protein interactome networks have provided invaluable functional information for numerous model organisms. Here we develop
Indexed as
Computational BiologyDatabases, GeneticDNA, PlantGenome, PlantHigh-Throughput Nucleotide SequencingOpen Reading FramesOryzaProtein Interaction MappingProtein Interaction MapsSequence Analysis, DNADNA, Plantnetworksnext-generation sequencingORFeomeprotein–protein interactionrice
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.