Evidence map›Paper›PMID 32398368›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene.

Sandy S Pineda, Yanni K-Y Chin, Eivind A B Undheim, Sebastian Senff, Mehdi Mobli, Claire Dauly, Pierre Escoubas, Graham M Nicholson, Quentin Kaas, Shaodong Guo and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 104 citations in OpenAlex.

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  9. Genome of venomous caterpillarProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Review
  11. Article
  12. Duplication of a conserved mitochondrial enzyme gene arms parasitoid wasps with venom cytotoxicity and oogenesis regulation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. Article
  14. A large language model for predicting neurotoxic peptides and neurotoxins.Protein science : a publication of the Protein Society · 2025
    Article
  15. Article
  16. Prospects and challenges of recombinant spider venom enzymes: insights fromFrontiers in bioengineering and biotechnology · 2025
    Article
  17. Article
  18. Article
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  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Sandy S PinedaInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia; sandy.spineda@gmail.com glenn.king@imb.uq.edu.au.ORCID 0000-0002-9003-0101
Yanni K-Y ChinInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia.
Eivind A B UndheimCentre for Advanced Imaging, The University of Queensland, St Lucia, QLD 4072, Australia.ORCID 0000-0002-8667-3999
Sebastian SenffInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia.
Mehdi MobliCentre for Advanced Imaging, The University of Queensland, St Lucia, QLD 4072, Australia.
Claire DaulyThermo Fisher Scientific, 91941 Courtaboeuf Cedex, France.
Pierre EscoubasUniversity of Nice Sophia Antipolis, 06000 Nice, France.
Graham M NicholsonSchool of Life Sciences, University of Technology Sydney, Broadway, NSW 2007, Australia.ORCID 0000-0002-4277-4296
Quentin KaasInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia.ORCID 0000-0001-9988-6152
Shaodong GuoInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia.
Volker HerzigInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia.ORCID 0000-0003-2514-3983
John S MattickGarvan-Weizmann Centre for Cellular Genomics, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW 2010, Australia.ORCID 0000-0002-7680-7527
Glenn F KingInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia; sandy.spineda@gmail.com glenn.king@imb.uq.edu.au.ORCID 0000-0002-2308-2200
The University of Queensland · AUGarvan Institute of Medical Research · AUUniversité Côte d'Azur · FRUniversity of Technology Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spiders are one of the most successful venomous animals, with more than 48,000 described species. Most spider venoms are dominated by cysteine-rich peptides with a diverse range of pharmacological activities. Some spider venoms contain thousands of unique peptides, but little is known about the mechanisms used to generate such complex chemical arsenals. We used an integrated transcriptomic, proteomic, and structural biology approach to demonstrate that the lethal Australian funnel-web spider produces 33 superfamilies of venom peptides and proteins. Twenty-six of the 33 superfamilies are disulfide-rich peptides, and we show that 15 of these are knottins that contribute >90% of the venom proteome. NMR analyses revealed that most of these disulfide-rich peptides are structurally related and range in complexity from simple to highly elaborated knottin domains, as well as double-knot toxins, that likely evolved from a single ancestral toxin gene.

Indexed as

AnimalsArthropod ProteinsAustraliaDipteraDisulfidesEvolution, MolecularFemaleGene Expression ProfilingMass SpectrometryPeptidesPhylogenyProtein ConformationProteomicsSpidersSpider VenomsArthropod ProteinsDisulfidesPeptidesSpider Venomsproteomicsspider venomstructural venomicstranscriptomicsvenom evolution

Identifiers

PMID32398368
PMCPMC7260951
OpenAlexW3025775216

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.