Evidence map›Paper›PMID 32394388›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2020

Automated Five-Color Multiplex Co-detection of MicroRNA and Protein Expression in Fixed Tissue Specimens.

Lorenzo F Sempere, Erin Zaluzec, Elizabeth Kenyon, Matti Kiupel, Anna Moore

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 16 citations in OpenAlex.

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  7. Review of Molecular Technologies for Investigating Canine Cancer.Animals : an open access journal from MDPI · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Lorenzo F SemperePrecision Health Program, Michigan State University, East Lansing, MI, USA. semperel@msu.edu.
Erin ZaluzecPrecision Health Program, Michigan State University, East Lansing, MI, USA.
Elizabeth KenyonPrecision Health Program, Michigan State University, East Lansing, MI, USA.
Matti KiupelVeterinary Diagnostic Laboratory, Michigan State University, Lansing, MI, USA.
Anna MoorePrecision Health Program, Michigan State University, East Lansing, MI, USA.
Michigan State University · US

Funding

Chemical ablation of ductal tree for breast cancer preventionR21CA226579 · NCI · MICHIGAN STATE UNIVERSITY · PI SEMPERE, LORENZO · 2019 to 2020
$371k
NCI NIH HHS R21 CA226579
6 · The paper itself

Abstract

microRNAs are an important class of noncoding regulatory RNAs with functional roles in development, physiology, and disease. Visualization of microRNA expression at a single-cell level has contributed to a better understanding of their biological function in animal models and their etiological contribution to human diseases. In addition, several microRNAs have been highlighted as potential biomarkers carrying diagnostic and prognostic information. Co-detection of microRNA expression with that of cell-type-specific proteins can enhance the interpretative power of expression changes during development or altered expression in pathological conditions. Here, we describe an automated fluorescence-based five-color multiplex assay for co-detection of microRNA (e.g., miR-10b, miR-21, miR-205), noncoding RNA (e.g., snRNA U6, 18S rRNA), and protein expression (e.g., cytokeratin 19, vimentin, collagen I) in paraffin-embedded formalin-fixed tissue slides on a Leica Bond Rx staining station. While this protocol uses mainly mouse tissues to demonstrate multiplex detection, it can be generally applied to single-cell expression analysis of other animal models and clinical specimens.

Indexed as

AnimalsHumansIn Situ HybridizationMiceMicroRNAsParaffin EmbeddingProteinsProteomicsTissue FixationMicroRNAsProteinsAnimal modelsAutomated stainingBreast cancerIn situ hybridizationLocked nucleic acid (LNA)microRNA (miR, miRNA)Molecular pathologyMultiplex detectionPancreatic cancer

Identifiers

PMID32394388
OpenAlexW3025804894

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.