Evidence map›Paper›PMID 32393888›Full record

ArticleNature cell biology2020

NFI transcription factors provide chromatin access to maintain stem cell identity while preventing unintended lineage fate choices.

Rene C Adam, Hanseul Yang, Yejing Ge, Nicole R Infarinato, Shiri Gur-Cohen, Yuxuan Miao, Ping Wang, Yilin Zhao, Catherine P Lu, Jeong E Kim and 7 more

Open access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
11.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
  2. Convergence of external and internal stressors on a stress-responsive enhancer of theProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Nuclear Factor I-B Delays Liver Fibrosis by Inhibiting Chemokine Ligand 5 Transcription.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  4. AmalgaMo: flexible DNA motif merging.Bioinformatics advances · 2026
    Article
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  12. Generation of theInternational journal of molecular sciences · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 2 countries.

Rene C Adam *Robin Chemers Neustein Laboratory of Mammalian Cell Biology and Development, Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.
Hanseul Yang *Robin Chemers Neustein Laboratory of Mammalian Cell Biology and Development, Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.ORCID http://orcid.org/0000-0001-5000-1675
Yejing GeRobin Chemers Neustein Laboratory of Mammalian Cell Biology and Development, Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.
Nicole R InfarinatoRobin Chemers Neustein Laboratory of Mammalian Cell Biology and Development, Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.
Shiri Gur-CohenRobin Chemers Neustein Laboratory of Mammalian Cell Biology and Development, Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.
Yuxuan MiaoRobin Chemers Neustein Laboratory of Mammalian Cell Biology and Development, Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.
Ping WangDepartment of Genetics, Albert Einstein College of Medicine, New York, NY, USA.
Yilin ZhaoDepartment of Genetics, Albert Einstein College of Medicine, New York, NY, USA.
Catherine P LuRobin Chemers Neustein Laboratory of Mammalian Cell Biology and Development, Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.
Jeong E KimDepartment of Dermatology, College of Medicine, Hanyang University, Seoul, South Korea.ORCID http://orcid.org/0000-0002-4368-1243
Joo Y KoDepartment of Dermatology, College of Medicine, Hanyang University, Seoul, South Korea.
Seung S PaikDepartment of Pathology, College of Medicine, Hanyang University, Seoul, South Korea.
Richard M GronostajskiDepartment of Biochemistry, Developmental Genomics Group, NYS Center of Excellence in Bioinformatics and Life Sciences, State University of New York at Buffalo, New York, NY, USA.ORCID http://orcid.org/0000-0003-4264-208X
Jaehwan KimLaboratory for Investigative Dermatology, The Rockefeller University, New York, NY, USA.ORCID http://orcid.org/0000-0002-7586-1425
James G KruegerLaboratory for Investigative Dermatology, The Rockefeller University, New York, NY, USA.
Deyou ZhengDepartment of Genetics, Albert Einstein College of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0003-4354-5337
Elaine FuchsRobin Chemers Neustein Laboratory of Mammalian Cell Biology and Development, Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA. fuchslb@rockefeller.edu.ORCID http://orcid.org/0000-0002-0978-5137
Howard Hughes Medical Institute · USAlbert Einstein College of Medicine · USHanyang University · KRRockefeller University · USThe University of Texas MD Anderson Cancer Center · USUniversity at Buffalo, State University of New York · US

Funding

VITAMIN A AND KERATINIZATION IN HUMAN EPITHELIAL CELLSR01AR031737 · NIAMS · UNIVERSITY OF CHICAGO · PI ELAINE FUCHS · 1986 to 2026
$16.6M
Dissecting Stem Cell Intrinsic Signaling Driving Tumor Relapse from ImmunotherapyR00CA237859 · NCI · UNIVERSITY OF CHICAGO · PI MIAO, YUXUAN PHOENIX · 2020 to 2022
$747k
Dissecting Stem Cell Intrinsic Signaling Driving Tumor Relapse from ImmunotherapyK99CA237859 · NCI · ROCKEFELLER UNIVERSITY · PI MIAO, YUXUAN PHOENIX · 2019 to 2020
$367k
Dissecting the transcriptional mechanisms that govern melanocyte stem cell activationF31AR073110 · NIAMS · ROCKEFELLER UNIVERSITY · PI INFARINATO, NICOLE RAI · 2018 to 2020
$132k
Howard Hughes Medical InstituteNCI NIH HHS K99 CA237859NCI NIH HHS R00 CA237859NIAMS NIH HHS F31 AR073110NIAMS NIH HHS R01 AR031737
6 · The paper itself

Abstract

Tissue homeostasis and regeneration rely on resident stem cells (SCs), whose behaviour is regulated through niche-dependent crosstalk. The mechanisms underlying SC identity are still unfolding. Here, using spatiotemporal gene ablation in murine hair follicles, we uncover a critical role for the transcription factors (TFs) nuclear factor IB (NFIB) and IX (NFIX) in maintaining SC identity. Without NFI TFs, SCs lose their hair-regenerating capability, and produce skin bearing striking resemblance to irreversible human alopecia, which also displays reduced NFIs. Through single-cell transcriptomics, ATAC-Seq and ChIP-Seq profiling, we expose a key role for NFIB and NFIX in governing super-enhancer maintenance of the key hair follicle SC-specific TF genes. When NFIB and NFIX are genetically removed, the stemness epigenetic landscape is lost. Super-enhancers driving SC identity are decommissioned, while unwanted lineages are de-repressed ectopically. Together, our findings expose NFIB and NFIX as crucial rheostats of tissue homeostasis, functioning to safeguard the SC epigenome from a breach in lineage confinement that otherwise triggers irreversible tissue degeneration.

Indexed as

Cell DifferentiationAlopeciaAnimalsCells, CulturedChromatinFemaleHair FollicleHumansMaleMiceMice, Inbred C57BLMice, KnockoutNFI Transcription FactorsRegenerationStem CellsChromatinNfib protein, mouseNFI Transcription FactorsNfix protein, mouse

Identifiers

PMID32393888
PMCPMC7367149
OpenAlexW3021900349

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.