Evidence map›Paper›PMID 32393878›Full record

ArticleNature plants2020

PDK1 regulates auxin transport and Arabidopsis vascular development through AGC1 kinase PAX.

Yao Xiao, Remko Offringa

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Nature plants, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
7.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Article
  3. Genome-Wide Analysis ofInternational journal of molecular sciences · 2025
    Article
  4. Keeping D6PK polar.Nature plants · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Molecular mechanisms ofPlant signaling & behavior · 2022
    Article
  10. Auxin Transporters-A Biochemical View.Cold Spring Harbor perspectives in biology · 2022
    Review
  11. Review
  12. A Decade of Pollen Phosphoproteomics.International journal of molecular sciences · 2021
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

Yao XiaoPlant Developmental Genetics, Institute of Biology Leiden, Leiden University, Leiden, the Netherlands.ORCID http://orcid.org/0000-0002-3078-7225
Remko OffringaPlant Developmental Genetics, Institute of Biology Leiden, Leiden University, Leiden, the Netherlands. r.offringa@biology.leidenuniv.nl.ORCID http://orcid.org/0000-0002-3293-5295
Leiden University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 3-phosphoinositide-dependent protein kinase 1 (PDK1) is a conserved master regulator of AGC kinases in eukaryotic organisms. pdk1 loss of function causes a lethal phenotype in animals and yeasts, but only mild phenotypic defects in Arabidopsis thaliana (Arabidopsis). The Arabidopsis genome contains two PDK1-encoding genes, PDK1 and PDK2. Here, we used clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated protein 9 (Cas9) to generate true loss-of-function pdk1 alleles, which, when combined with pdk2 alleles, showed severe developmental defects including fused cotyledons, a short primary root, dwarf stature and defects in male fertility. We obtained evidence that PDK1 is responsible for AGC1 kinase PROTEIN KINASE ASSOCIATED WITH BRX (PAX) activation by phosphorylation during vascular development, and that the PDK1 phospholipid-binding Pleckstrin Homology domain is not required for this process. Our data indicate that PDK1 regulates polar auxin transport by activating AGC1 clade kinases, resulting in PIN phosphorylation.

Indexed as

3-Phosphoinositide-Dependent Protein KinasesArabidopsisArabidopsis ProteinsCRISPR-Associated Protein 9CRISPR-Cas SystemsGene EditingIndoleacetic AcidsPhloemPhosphorylationPlant Growth Regulators3-Phosphoinositide-Dependent Protein KinasesArabidopsis ProteinsCRISPR-Associated Protein 9Indoleacetic AcidsPlant Growth Regulators

Identifiers

PMID32393878
OpenAlexW3021749632

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.