Evidence map›Paper›PMID 32393794›Full record

ArticleNature communications2020

Fecal microbiota transplant rescues mice from human pathogen mediated sepsis by restoring systemic immunity.

Sangman M Kim, Jennifer R DeFazio, Sanjiv K Hyoju, Kishan Sangani, Robert Keskey, Monika A Krezalek, Nikolai N Khodarev, Naseer Sangwan, Scott Christley, Katharine G Harris and 15 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 1 synthesis or guideline pooled it, 136 citations in OpenAlex.

  1. Pooled it
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  13. Preparing the Bowel for Surgery in the Era of Microbiome Sciences.The Surgical clinics of North America · 2025
    Review
  14. Unravelling three-way interactions betweenJournal of medical microbiology · 2025
    Review
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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 2 institutions in 2 countries.

Sangman M Kim *Committee on Immunology, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-8204-0393
Jennifer R DeFazio *Department of Surgery, University of Chicago, Chicago, IL, USA.
Sanjiv K HyojuDepartment of Surgery, University of Chicago, Chicago, IL, USA.
Kishan SanganiCommittee on Immunology, University of Chicago, Chicago, IL, USA.
Robert KeskeyCommittee on Immunology, University of Chicago, Chicago, IL, USA.
Monika A KrezalekDepartment of Surgery, University of Chicago, Chicago, IL, USA.
Nikolai N KhodarevDepartment of Radiation and Cellular Oncology and The Ludwig Center for Metastasis Research, University of Chicago, Chicago, IL, USA.
Naseer SangwanDepartment of Surgery, University of Chicago, Chicago, IL, USA.
Scott ChristleyDepartment of Surgery, University of Chicago, Chicago, IL, USA.
Katharine G HarrisDepartment of Medicine, University of Chicago, Chicago, IL, USA.
Ankit MalikCommittee on Immunology, University of Chicago, Chicago, IL, USA.
Alexander ZaborinDepartment of Surgery, University of Chicago, Chicago, IL, USA.
Romain BouziatCommittee on Immunology, University of Chicago, Chicago, IL, USA.
Diana R RanoaDepartment of Radiation and Cellular Oncology and The Ludwig Center for Metastasis Research, University of Chicago, Chicago, IL, USA.
Mara WiegerinckDepartment of Surgery, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0001-5097-3554
Jordan D ErnestDepartment of Medicine, University of Chicago, Chicago, IL, USA.
Baddr A ShakhsheerDepartment of Surgery, University of Chicago, Chicago, IL, USA.
Irma D FlemingDepartment of Surgery, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-3294-4770
Ralph R WeichselbaumDepartment of Radiation and Cellular Oncology and The Ludwig Center for Metastasis Research, University of Chicago, Chicago, IL, USA.
Dionysios A AntonopoulosDepartment of Medicine, University of Chicago, Chicago, IL, USA.
Jack A GilbertDepartment of Surgery, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0001-7920-7001
Luis B BarreiroDepartment of Medicine, University of Chicago, Chicago, IL, USA.
Olga ZaborinaDepartment of Surgery, University of Chicago, Chicago, IL, USA.
Bana JabriCommittee on Immunology, University of Chicago, Chicago, IL, USA. bjabri@bsd.uchicago.edu.
John C AlverdyDepartment of Surgery, University of Chicago, Chicago, IL, USA. jalverdy@surgery.bsd.uchicago.edu.
University of Chicago · USArgonne National Laboratory · US

Funding

MEDICAL SCIENTIST TRAININGT32GM007281 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 1985 to 2022
$32.1M
ULTRASTRUCTURE AND CYTOMORPHOLOGY COREP30DK042086 · NIDDK · UNIVERSITY OF CHICAGO · PI CHANG, EUGENE B · 1990 to 2025
$29.8M
Research Training in Digestive Health, Diseases, and NutritionT32DK007074 · NIDDK · UNIVERSITY OF CHICAGO · PI EUGENE B CHANG · 1986 to 2026
$11.3M
PSEUDOMONAS'EFFECTS ON THE GUT BARRIER FROM SURGERYR01GM062344 · NIGMS · UNIVERSITY OF CHICAGO · PI ALVERDY, JOHN C · 2001 to 2025
$9.2M
NIDDK NIH HHS P30 DK042086NIDDK NIH HHS T32 DK007074NIGMS NIH HHS R01 GM062344NIGMS NIH HHS T32 GM007281
6 · The paper itself

Abstract

Death due to sepsis remains a persistent threat to critically ill patients confined to the intensive care unit and is characterized by colonization with multi-drug-resistant healthcare-associated pathogens. Here we report that sepsis in mice caused by a defined four-member pathogen community isolated from a patient with lethal sepsis is associated with the systemic suppression of key elements of the host transcriptome required for pathogen clearance and decreased butyrate expression. More specifically, these pathogens directly suppress interferon regulatory factor 3. Fecal microbiota transplant (FMT) reverses the course of otherwise lethal sepsis by enhancing pathogen clearance via the restoration of host immunity in an interferon regulatory factor 3-dependent manner. This protective effect is linked to the expansion of butyrate-producing Bacteroidetes. Taken together these results suggest that fecal microbiota transplantation may be a treatment option in sepsis associated with immunosuppression.

Indexed as

Fecal Microbiota TransplantationImmunityAnimalsButyric AcidFecesGastrointestinal MicrobiomeGastrointestinal TractHistone Deacetylase InhibitorsHumansInterferon Regulatory Factor-3MaleMice, Inbred C57BLSepsisSignal TransductionTranscription, GeneticButyric AcidHistone Deacetylase InhibitorsInterferon Regulatory Factor-3Irf3 protein, mouse

Identifiers

PMID32393794
PMCPMC7214422
OpenAlexW3023658275

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.