Evidence map›Paper›PMID 32393437›Full record

ArticleeLife2020

Heterogeneity of proteome dynamics between connective tissue phases of adult tendon.

Howard Choi, Deborah Simpson, Ding Wang, Mark Prescott, Andrew A Pitsillides, Jayesh Dudhia, Peter D Clegg, Peipei Ping, Chavaunne T Thorpe

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
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  5. Estrogen and Progesterone Exhibit Distinct Yet Coordinated Roles in the Regulation of Tendon Extracellular Matrix Remodeling.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2026
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  10. Review
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  15. Investigating the temporal roles of decorin and biglycan in tendon healing.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2023
    Article
  16. Peptide location fingerprinting identifies structural alterations within basement membrane components in ageing kidney.Matrix biology : journal of the International Society for Matrix Biology · 2023
    Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Howard Choi *Department of Physiology and Medicine, David Geffen School of Medicine, UCLA, Los Angeles, United States.
Deborah Simpson *Centre for Proteome Research, Biosciences Building, Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom.
Ding WangDepartment of Physiology and Medicine, David Geffen School of Medicine, UCLA, Los Angeles, United States.
Mark PrescottCentre for Proteome Research, Biosciences Building, Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom.
Andrew A PitsillidesDepartment of Comparative Biomedical Sciences, Royal Veterinary College, London, United Kingdom.
Jayesh DudhiaDepartment of Clinical Sciences and Services, Royal Veterinary College, Hatfield, United Kingdom.
Peter D CleggDepartment of Musculoskeletal Biology, Institute of Ageing and Chronic Disease, University of Liverpool, Liverpool, United Kingdom.
Peipei PingDepartment of Physiology and Medicine, David Geffen School of Medicine, UCLA, Los Angeles, United States.
Chavaunne T ThorpeDepartment of Comparative Biomedical Sciences, Royal Veterinary College, London, United Kingdom.ORCID 0000-0001-7051-3504
Royal Veterinary College · GBUniversity of California, Los Angeles · USUniversity of Liverpool · GB

Funding

Omics Phenotyping for Identifying Molecular Signatures of the Healthy and Failing Heart: An Integrated Data Science PlatformR35HL135772 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PING, PEIPEI · 2017 to 2023
$6.4M
Extraction of molecular signature of HFpEF via a machine learning-empowered proteomic characterization: A study of the BCAA pathwayR01HL146739 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI NG, CHUN MING DOMINIC, WANG, DING · 2019 to 2022
$2.6M
iDISCOVER: Integrated Data Science Training in CardioVascular MedicineT32HL139450 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BUI, ALEX, PING, PEIPEI · 2018 to 2022
$1.3M
Arthritis Research UK 21216NHLBI NIH HHS R01 HL146739NHLBI NIH HHS R35 HL135772NHLBI NIH HHS T32 HL139450Versus Arthritis 21216
6 · The paper itself

Abstract

Maintenance of connective tissue integrity is fundamental to sustain function, requiring protein turnover to repair damaged tissue. However, connective tissue proteome dynamics remain largely undefined, as do differences in turnover rates of individual proteins in the collagen and glycoprotein phases of connective tissue extracellular matrix (ECM). Here, we investigate proteome dynamics in the collagen and glycoprotein phases of connective tissues by exploiting the spatially distinct fascicular (collagen-rich) and interfascicular (glycoprotein-rich) ECM phases of tendon. Using isotope labelling, mass spectrometry and bioinformatics, we calculate turnover rates of individual proteins within rat Achilles tendon and its ECM phases. Our results demonstrate complex proteome dynamics in tendon, with ~1000 fold differences in protein turnover rates, and overall faster protein turnover within the glycoprotein-rich interfascicular matrix compared to the collagen-rich fascicular matrix. These data provide insights into the complexity of proteome dynamics in tendon, likely required to maintain tissue homeostasis.

Indexed as

Achilles TendonAnimalsConnective TissueExtracellular MatrixExtracellular Matrix ProteinsFemaleKineticsProtein Interaction MapsProteinsProteomeRats, WistarExtracellular Matrix ProteinsProteinsProteomebiochemistrychemical biologydeuteriuminterfascicular matrixmolecular biophysicsproteome dynamicsproteomicsproteostasisratstructural biologyTendon

Identifiers

PMID32393437
PMCPMC7217697
OpenAlexW3025017808

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.