Evidence map›Paper›PMID 32392219›Full record

ArticlePLoS genetics2020

UVR8-mediated inhibition of shade avoidance involves HFR1 stabilization in Arabidopsis.

Eleni Tavridou, Emanuel Schmid-Siegert, Christian Fankhauser, Roman Ulm

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 42 citations in OpenAlex.

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  11. International journal of molecular sciences · 2022
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  17. A constitutively monomeric UVR8 photoreceptor confers enhanced UV-B photomorphogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Eleni TavridouDepartment of Botany and Plant Biology, Section of Biology, Faculty of Science, University of Geneva, CH, Geneva, Switzerland.ORCID 0000-0002-4027-0940
Emanuel Schmid-SiegertSIB-Swiss Institute of Bioinformatics, University of Lausanne, CH, Lausanne, Switzerland.ORCID 0000-0003-1339-5120
Christian FankhauserCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, CH, Lausanne, Switzerland.
Roman UlmDepartment of Botany and Plant Biology, Section of Biology, Faculty of Science, University of Geneva, CH, Geneva, Switzerland.ORCID 0000-0001-8014-7392
University of Geneva · CHSIB Swiss Institute of Bioinformatics · CHUniversity of Lausanne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sun-loving plants perceive the proximity of potential light-competing neighboring plants as a reduction in the red:far-red ratio (R:FR), which elicits a suite of responses called the "shade avoidance syndrome" (SAS). Changes in R:FR are primarily perceived by phytochrome B (phyB), whereas UV-B perceived by UV RESISTANCE LOCUS 8 (UVR8) elicits opposing responses to provide a counterbalance to SAS, including reduced shade-induced hypocotyl and petiole elongation. Here we show at the genome-wide level that UVR8 broadly suppresses shade-induced gene expression. A subset of this gene regulation is dependent on the UVR8-stabilized atypical bHLH transcription regulator LONG HYPOCOTYL IN FAR-RED 1 (HFR1), which functions in part redundantly with PHYTOCHROME INTERACTING FACTOR 3-LIKE 1 (PIL1). In parallel, UVR8 signaling decreases protein levels of the key positive regulators of SAS, namely the bHLH transcription factors PHYTOCHROME INTERACTING FACTOR 4 (PIF4) and PIF5, in a COP1-dependent but HFR1-independent manner. We propose that UV-B antagonizes SAS via two mechanisms: degradation of PIF4 and PIF5, and HFR1- and PIL1-mediated inhibition of PIF4 and PIF5 function. This work highlights the importance of typical and atypical bHLH transcription regulators for the integration of light signals from different photoreceptors and provides further mechanistic insight into the crosstalk of UVR8 signaling and SAS.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsChromatinChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDown-RegulationGene Expression Regulation, PlantProtein StabilityProteolysisTranscription FactorsUbiquitin-Protein LigasesUltraviolet RaysArabidopsis ProteinsAt1g02340 protein, ArabidopsisAT2G32950 protein, ArabidopsisBasic Helix-Loop-Helix ProteinsChromatinChromosomal Proteins, Non-HistoneDNA-Binding ProteinsPIF4 protein, ArabidopsisPIF5 protein, ArabidopsisPIL1 protein, ArabidopsisTranscription FactorsUbiquitin-Protein LigasesUvr8 protein, Arabidopsis

Identifiers

PMID32392219
PMCPMC7241853
OpenAlexW3022268004

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.