Evidence map›Paper›PMID 32391199›Full record

ArticlePeerJ2020

Post-transcriptional regulation of several biological processes involved in latex production in

Julie Leclercq, Shuangyang Wu, Benoît Farinas, Stéphanie Pointet, Bénédicte Favreau, Hélène Vignes, Kuswanhadi Kuswanhadi, Enrique Ortega-Abboud, Jean-François Dufayard, Shenghan Gao and 4 more

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Julie Leclercq *CIRAD, UMR AGAP, Montpellier, France.
Shuangyang Wu *University of Chinese Academy of Sciences, CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Benoît FarinasCIRAD, UMR AGAP, Montpellier, France.
Stéphanie PointetCIRAD, UMR AGAP, Montpellier, France.
Bénédicte FavreauCIRAD, UMR AGAP, Montpellier, France.
Hélène VignesCIRAD, UMR AGAP, Montpellier, France.
Kuswanhadi KuswanhadiSembawa Research Centre, Indonesian Rubber Research Institute, Palembang, Indonesia.
Enrique Ortega-AbboudCIRAD, UMR AGAP, Montpellier, France.
Jean-François DufayardCIRAD, UMR AGAP, Montpellier, France.
Shenghan GaoUniversity of Chinese Academy of Sciences, CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Gaëtan DrocCIRAD, UMR AGAP, Montpellier, France.
Songnian HuUniversity of Chinese Academy of Sciences, CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Chaorong TangHainan University, College of Tropical Crops, Haikou, China.
Pascal MontoroCIRAD, UMR AGAP, Montpellier, France.
Centre de Coopération Internationale en Recherche Agronomique pour le Développement · FRBeijing Institute of Genomics · CNHainan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSmall RNAs modulate plant gene expression at both the transcriptional and post-transcriptional level, mostly through the induction of either targeted DNA methylation or transcript cleavage, respectively. Small RNA networks are involved in specific plant developmental processes, in signaling pathways triggered by various abiotic stresses and in interactions between the plant and viral and non-viral pathogens. They are also involved in silencing maintenance of transposable elements and endogenous viral elements. Alteration in small RNA production in response to various environmental stresses can affect all the above-mentioned processes. In rubber trees, changes observed in small RNA populations in response to trees affected by tapping panel dryness, in comparison to healthy ones, suggest a shift from a transcriptional to a post-transcriptional regulatory pathway. This is the first attempt to characterise small RNAs involved in post-transcriptional silencing and their target transcripts in

methodsGenes producing microRNAs (

resultsCompared to other tissues, latex cells had a higher proportion of transcript cleavage activity mediated by miRNAs and ta-siRNAs. Post-transcriptional regulation was also observed at each step of the natural rubber biosynthesis pathway. Among the genes involved in the miRNA biogenesis pathway, our analyses showed that all of them are expressed in latex. Using phylogenetic analyses, we show that both the

Indexed as

Abiotic stressCrop epigenomicsDegradomeLatexmiRNARubber treeSmall RNA

Identifiers

PMID32391199
PMCPMC7195832
OpenAlexW3021005681

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.