Evidence map›Paper›PMID 32391056›Full record

ArticleFrontiers in genetics2020

Genetic Connectedness Between Norwegian White Sheep and New Zealand Composite Sheep Populations With Similar Development History.

Hinayah Rojas Oliveira, John Colin McEwan, Jette Jakobsen, Thor Blichfeldt, Theodorus Meuwissen, Natalie Pickering, Shannon Marie Clarke, Luiz F Brito

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Article in Frontiers in genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hinayah Rojas OliveiraDepartment of Animal Sciences, Purdue University, West Lafayette, IN, United States.
John Colin McEwanAgResearch Limited, Invermay Agricultural Centre, Mosgiel, New Zealand.
Jette JakobsenThe Norwegian Association of Sheep and Goat Breeders, Ås, Norway.
Thor BlichfeldtThe Norwegian Association of Sheep and Goat Breeders, Ås, Norway.
Theodorus MeuwissenDepartment of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, Ås, Norway.
Natalie PickeringFocus Genetics, Napier, New Zealand.
Shannon Marie ClarkeAgResearch Limited, Invermay Agricultural Centre, Mosgiel, New Zealand.
Luiz F BritoDepartment of Animal Sciences, Purdue University, West Lafayette, IN, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Norwegian White sheep (NWS) and New Zealand Terminal Sire Composite (NZC) sheep breeds have been developed based on crossing of multiple breeds, mainly of Northern European origin. A close genetic relationship between these populations could enable across-country genomic evaluations. The main objectives of this study were to assess the genetic connectedness between Norwegian and New Zealand sheep populations and estimate numerous genetic diversity metrics for these two populations. A total of 792 NWS and 16,912 NZC animals were genotyped using a high-density Illumina SNP chip panel (∼606K SNPs). The NZC animals were grouped based on their breed composition as: Finn, Lamb Supreme, Primera, Texel, "Other Dual Purpose", and "Other Terminal Sire". The average level of linkage disequilibrium ranged from 0.156 (for Primera) to 0.231 (for Finn). The lowest consistency of gametic phase was estimated between NWS and Finn (0.397), and between NWS and Texel (0.443), respectively. Similar consistency of gametic phase was estimated between NWS and the other NZC populations (∼ 0.52). For all composite sheep populations analyzed in this study, the majority of runs of homozygosity (ROH) segments identified had short length (<2,500 kb), indicating ancient (instead of recent) inbreeding. The variation in the number of ROH segments observed in the NWS was similar to the variation observed in Primera and Lamb Supreme. There was no clear discrimination between NWS and NZC based on the first few principal components. In addition, based on admixture analyses, there seems to be a significant overlap of the ancestral populations that contributed to the development of both NWS and NZC. There were no evident signatures of selection in these populations, which might be due to recent crossbreeding. In conclusion, the NWS composite breed was shown to be moderately related to NZC populations, especially Primera and Lamb Supreme. The findings reported here indicate a promising opportunity for collaborative genomic analyses involving NWS and NZC sheep populations.

Indexed as

admixturegametic phasehomozygosityinbreedinglinkage disequilibrium

Identifiers

PMID32391056
PMCPMC7194024

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.