Evidence map›Paper›PMID 32390085›Full record

ArticleWorld journal of microbiology & biotechnology2020

Rapid visual detection of Vibrio parahaemolyticus in seafood samples by loop-mediated isothermal amplification with hydroxynaphthol blue dye.

Karanth Padyana Anupama, Ashwath Nayak, Indrani Karunasagar, Biswajit Maiti

Abstract read
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In one paragraph

Article in World journal of microbiology & biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Karanth Padyana AnupamaDivision of Infectious Diseases, Nitte University Centre for Science Education and Research, Paneer Campus, Deralakatte, Mangalore, 575018, India.
Ashwath NayakDivision of Infectious Diseases, Nitte University Centre for Science Education and Research, Paneer Campus, Deralakatte, Mangalore, 575018, India.
Indrani KarunasagarDivision of Infectious Diseases, Nitte University Centre for Science Education and Research, Paneer Campus, Deralakatte, Mangalore, 575018, India.
Biswajit MaitiDivision of Infectious Diseases, Nitte University Centre for Science Education and Research, Paneer Campus, Deralakatte, Mangalore, 575018, India. maiti.b@nitte.edu.in.ORCID http://orcid.org/0000-0002-8231-7030

Funding

Department of Biotechnology, Government of India BT/PR12230/AAQ/3/698/2014
6 · The paper itself

Abstract

The detection and monitoring of Vibrio parahaemolyticus pathogen in aquatic foods have become essential for preventing outbreaks. In this study, loop-mediated isothermal amplification (LAMP) assay with the azo dye, hydroxynaphthol blue (HNB) was developed targeting species-specific tlh gene. The assay was carried out on 62 seafood samples that included clam and shrimp and compared with conventional LAMP assay performed with the commonly used fluorescent dye, conventional PCR, and real-time PCR (RT-PCR). Of 62 samples studied for tlh gene, 32 (51.61%) gave positive by HNB-LAMP, which comprised 22 (70.96%) clam samples and 10 (32.25%) shrimp samples. The HNB-LAMP assay was found to be highly sensitive, specific, and superior to conventional PCR (p > 0.05). RT-PCR presented higher sensitivity than HNB-LAMP; however, it has the limitation of being cost-intensive and requiring technical expertise to perform. HNB-LAMP is affordable, rapid, simple, and easy to perform, allowing naked eye visualization.

Indexed as

NaphthalenesulfonatesColoring AgentsFood MicrobiologyMolecular Diagnostic TechniquesNucleic Acid Amplification TechniquesReal-Time Polymerase Chain ReactionSeafoodSensitivity and SpecificityStaining and LabelingUltraviolet RaysVibrio parahaemolyticusColoring AgentsNaphthalenesulfonatestrisodium 3-hydroxy-4-((2Z)-2-(2-oxo-4-sulfonatonaphthalen-1-ylidene)hydrazinyl)naphthalene-2,7-disulfonateHydroxynaphthol blueLAMP assayVibrio parahaemolyticusVisual detection

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.