Evidence map›Paper›PMID 32389918›Full record

ArticleProceedings of the Japan Academy. Series B, Physical and biological sciences2020

Comprehensive analysis of DNA adducts (DNA adductome analysis) in the liver of rats treated with 1,4-dioxane.

Yukari Totsuka, Yuya Maesako, Hanako Ono, Momoko Nagai, Mamoru Kato, Min Gi, Hideki Wanibuchi, Shoji Fukushima, Kazuhiro Shiizaki, Hitoshi Nakagama

Open access · diamondAbstract read
In one paragraph

Article in Proceedings of the Japan Academy. Series B, Physical and biological sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Mechanistic Considerations in 1,4-Dioxane Cancer Risk Assessment.Current opinion in environmental science & health · 2022
    Article
  6. Article
  7. Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Yukari TotsukaDivision of Carcinogenesis & Cancer Prevention, National Cancer Center Research Institute.
Yuya MaesakoDivision of Carcinogenesis & Cancer Prevention, National Cancer Center Research Institute.
Hanako OnoDepartment of Bioinformatics, National Cancer Center Research Institute.
Momoko NagaiDepartment of Bioinformatics, National Cancer Center Research Institute.
Mamoru KatoDepartment of Bioinformatics, National Cancer Center Research Institute.
Min GiDepartment of Environmental Risk Assessment, Osaka City University, Graduate School of Medicine.
Hideki WanibuchiDepartment of Environmental Risk Assessment, Osaka City University, Graduate School of Medicine.
Shoji FukushimaJapan Bioassay Research Center, Japan Organization of Occupational Health and Safety.
Kazuhiro ShiizakiDepartment of Life Sciences, Graduate School of Life Sciences, Toyo University.
Hitoshi NakagamaNational Cancer Center.
National Cancer Research Institute · GBOsaka City University · JPToyo University · JPJapan Organization of Occupational Health and Safety · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

1,4-Dioxane is a genotoxic carcinogen, and its mutagenic properties were recently observed in the liver of guanine phosphoribosyl transferase (gpt) delta transgenic rats. However, the mechanisms of its genotoxicity remain unclear. We analyzed DNA adduct formation in rat livers following 1,4-dioxane treatment. After administering 1,4-dioxane in drinking water at doses of 0, 20, 200, and 5,000 ppm, liver adduct formation was analyzed by DNA adductome analysis. Adducts in treated rat livers were dose-dependently increased compared with those in the control group. Principal component analysis-discriminant analysis (PCA-DA) clearly revealed two clusters of DNA adducts, associated with 0 ppm and low-dose (20 ppm) 1,4-dioxane-treatment versus middle- and high-dose (200, 5,000 ppm)-treated rats. After confirming the intensity of each adduct, three adducts were screened as characteristic of 1,4-dioxane treatment. Two of the three candidates contained thymine or cytidine/uracil moieties. Another candidate was identified as 8-oxo-dG based on mass fragmentation together with high-resolution accurate-mass (HRAM) mass spectrometry data. Oxidative stress responses may partly explain the mechanisms of increased mutations in the liver of gpt delta rats following 1,4-dioxane treatment.

Indexed as

AnimalsDioxanesDNA AdductsLiverRats1,4-dioxaneDioxanesDNA Adducts1,4-dioxaneDNA adductgpt delta rat

Identifiers

PMID32389918
PMCPMC7248212
OpenAlexW3023782248

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.