Evidence map›Paper›PMID 32388675›Full record

ArticleEuropean biophysics journal : EBJ2020

A calibration disk for the correction of radial errors from chromatic aberration and rotor stretch in the Optima AUC™ analytical ultracentrifuge.

Marielle Stoutjesdyk, Amy Henrickson, Geoff Minors, Borries Demeler

Abstract read
PubMed Publisher
In one paragraph

Article in European biophysics journal : EBJ, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Calibrating analytical ultracentrifuges.European biophysics journal : EBJ · 2021
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Marielle StoutjesdykDepartment of Physics and Astronomy, The University of Lethbridge, 4401 University Drive, Lethbridge, AB, T1K 3M4, Canada.
Amy HenricksonDepartment of Chemistry and Biochemistry, The University of Lethbridge, 4401 University Drive, Lethbridge, AB, T1K 3M4, Canada.
Geoff MinorsTechnical Services, The University of Lethbridge, 4401 University Drive, Lethbridge, AB, T1K 3M4, Canada.
Borries DemelerDepartment of Chemistry and Biochemistry, The University of Lethbridge, 4401 University Drive, Lethbridge, AB, T1K 3M4, Canada. demeler@gmail.com.ORCID http://orcid.org/0000-0002-2414-9518

Funding

Canadian Foundation for Innovation CFI-37589CIHR FDN 148469NIH HHS GM120600NSERC DG-RGPIN-2019-05637
6 · The paper itself

Abstract

Experiments performed in the analytical ultracentrifuge (AUC) measure sedimentation and diffusion coefficients, as well as the partial concentration of colloidal mixtures of molecules in the solution phase. From this information, their abundance, size, molar mass, density and anisotropy can be determined. The accuracy with which these parameters can be determined depends in part on the accuracy of the radial position recordings and the boundary conditions used in the modeling of the AUC data. The AUC instrument can spin samples at speeds up to 60,000 rpm, generating forces approaching 300,000 g. Forces of this magnitude will stretch the titanium rotors used in the instrument, shifting the boundary conditions required to solve the flow equations used in the modeling of the AUC data. A second source of error is caused by the chromatic aberration resulting from imperfections in the UV-visible absorption optics. Both errors are larger than the optical resolution of currently available instrumentation. Here, we report software routines that correct these errors, aided by a new calibration disk which can be used in place of the counterbalance to provide a calibration reference for each experiment to verify proper operation of the AUC instrument. We describe laboratory methods and software routines in UltraScan that incorporate calibrations and corrections for the rotor stretch and chromatic aberration in order to support Good Manufacturing Practices for AUC data analysis.

Indexed as

CalibrationDiffusionHydrodynamicsResearch DesignUltracentrifugationAnalytical ultracentrifugeCalibrationGood manufacturing practicesInstrumentationReference materialsUltraScan

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.