Evidence map›Paper›PMID 32386547›Full record

ArticleCell2020

Unblending of Transcriptional Condensates in Human Repeat Expansion Disease.

Shaon Basu, Sebastian D Mackowiak, Henri Niskanen, Dora Knezevic, Vahid Asimi, Stefanie Grosswendt, Hylkje Geertsema, Salaheddine Ali, Ivana Jerković, Helge Ewers and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 123 papers.

0numbers the graph read from it
0cells of the map it votes in
123citing papers in PubMed
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

123 citing papers in PubMed, 205 citations in OpenAlex.

  1. Review
  2. Article
  3. Current Challenges of Transcription Compartmentalization Research.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
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63 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Shaon BasuDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany.
Sebastian D MackowiakDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany.
Henri NiskanenDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany.
Dora KnezevicDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany.
Vahid AsimiDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany.
Stefanie GrosswendtDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany.
Hylkje GeertsemaInstitute for Chemistry and Biochemistry, Free University Berlin, 14195 Berlin, Germany.
Salaheddine AliRG Development and Disease, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany; Institute for Medical and Human Genetics, Charité Universitätsmedizin Berlin, 13353 Berlin, Germany; Charité-Universitätsmedizin Berlin, BCRT-Berlin Institute of Health Center for Regenerative Therapies, 10178 Berlin, Germany.
Ivana JerkovićRG Development and Disease, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany.
Helge EwersInstitute for Chemistry and Biochemistry, Free University Berlin, 14195 Berlin, Germany.
Stefan MundlosRG Development and Disease, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany; Institute for Medical and Human Genetics, Charité Universitätsmedizin Berlin, 13353 Berlin, Germany; Charité-Universitätsmedizin Berlin, BCRT-Berlin Institute of Health Center for Regenerative Therapies, 10178 Berlin, Germany.
Alexander MeissnerDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany; Broad Institute of MIT and Harvard, Cambridge, MA, USA; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, USA.
Daniel M IbrahimRG Development and Disease, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany; Institute for Medical and Human Genetics, Charité Universitätsmedizin Berlin, 13353 Berlin, Germany; Charité-Universitätsmedizin Berlin, BCRT-Berlin Institute of Health Center for Regenerative Therapies, 10178 Berlin, Germany.
Denes HniszDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany. Electronic address: hnisz@molgen.mpg.de.
Max Planck Institute for Molecular Genetics · DEBerlin Institute of Health at Charité - Universitätsmedizin Berlin · DEFreie Universität Berlin · DEBroad Institute · US

Funding

Center for Cell CircuitsP50HG006193 · NHGRI · BROAD INSTITUTE, INC. · PI REGEV, AVIV · 2011 to 2015
$15.6M
NHGRI NIH HHS P50 HG006193
6 · The paper itself

Abstract

Expansions of amino acid repeats occur in >20 inherited human disorders, and many occur in intrinsically disordered regions (IDRs) of transcription factors (TFs). Such diseases are associated with protein aggregation, but the contribution of aggregates to pathology has been controversial. Here, we report that alanine repeat expansions in the HOXD13 TF, which cause hereditary synpolydactyly in humans, alter its phase separation capacity and its capacity to co-condense with transcriptional co-activators. HOXD13 repeat expansions perturb the composition of HOXD13-containing condensates in vitro and in vivo and alter the transcriptional program in a cell-specific manner in a mouse model of synpolydactyly. Disease-associated repeat expansions in other TFs (HOXA13, RUNX2, and TBP) were similarly found to alter their phase separation. These results suggest that unblending of transcriptional condensates may underlie human pathologies. We present a molecular classification of TF IDRs, which provides a framework to dissect TF function in diseases associated with transcriptional dysregulation.

Indexed as

AlanineAnimalsBase SequenceDisease Models, AnimalDNA Repeat ExpansionHomeodomain ProteinsHumansMaleMiceMutationPedigreeSyndactylyTranscription FactorsAlaninehomeobox protein HOXA13Homeodomain ProteinsHOXD13 protein, humanTranscription Factorsactivation domaincondensateintrinscially disordered regionphase separationrepeat expansionsynpolydactylytranscriptional condensatetranscription factor

Identifiers

PMID32386547
PMCPMC7261253
OpenAlexW3023736115

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.