Evidence map›Paper›PMID 32386295›Full record

ArticleGenome biology and evolution2020

Loss of the Polyketide Synthase StlB Results in Stalk Cell Overproduction in Polysphondylium violaceum.

Takaaki B Narita, Yoshinori Kawabe, Koryu Kin, Richard A Gibbs, Adam Kuspa, Donna M Muzny, Stephen Richards, Joan E Strassmann, Richard Sucgang, Kim C Worley and 1 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Generating polyketide diversity inProceedings. Biological sciences · 2022
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Takaaki B NaritaSchool of Life Sciences, University of Dundee, United Kingdom.
Yoshinori KawabeSchool of Life Sciences, University of Dundee, United Kingdom.
Koryu KinSchool of Life Sciences, University of Dundee, United Kingdom.
Richard A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Adam KuspaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Donna M MuznyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Stephen RichardsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Joan E StrassmannDepartment of Biology, Washington University.
Richard SucgangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Kim C WorleyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Pauline SchaapSchool of Life Sciences, University of Dundee, United Kingdom.
Baylor College of Medicine · USUniversity of Dundee · GBChiba Institute of Technology · JPWashington University in St. Louis · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
European Research Council 742288NHGRI NIH HHS U54 HG003273Wellcome TrustWellcome Trust 100293/Z/12/Z
6 · The paper itself

Abstract

Major phenotypic innovations in social amoeba evolution occurred at the transition between the Polysphondylia and group 4 Dictyostelia, which comprise the model organism Dictyostelium discoideum, such as the formation of a new structure, the basal disk. Basal disk differentiation and robust stalk formation require the morphogen DIF-1, synthesized by the polyketide synthase StlB, the des-methyl-DIF-1 methyltransferase DmtA, and the chlorinase ChlA, which are conserved throughout Dictyostelia. To understand how the basal disk and other innovations evolved in group 4, we sequenced and annotated the Polysphondylium violaceum (Pvio) genome, performed cell type-specific transcriptomics to identify cell-type marker genes, and developed transformation and gene knock-out procedures for Pvio. We used the novel methods to delete the Pvio stlB gene. The Pvio stlB- mutants formed misshapen curly sorogens with thick and irregular stalks. As fruiting body formation continued, the upper stalks became more regular, but structures contained 40% less spores. The stlB- sorogens overexpressed a stalk gene and underexpressed a (pre)spore gene. Normal fruiting body formation and sporulation were restored in Pvio stlB- by including DIF-1 in the supporting agar. These data indicate that, although conserved, stlB and its product(s) acquired both a novel role in the group 4 Dictyostelia and a role opposite to that in its sister group.

Indexed as

Genome, ProtozoanMyxomycetesPolyketide SynthasesProtozoan ProteinsPolyketide SynthasesProtozoan Proteinscell type-specific transcriptomeDIF-1evolution of novel cell typesgenetic transformationpolyketide synthasePolysphondylium violaceum genome

Identifiers

PMID32386295
PMCPMC7259674
OpenAlexW3022102386

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.