Evidence map›Paper›PMID 32385330›Full record

ArticleScientific reports2020

A selective autophagy cargo receptor NBR1 modulates abscisic acid signalling in Arabidopsis thaliana.

Leszek Tarnowski, Milagros Collados Rodriguez, Jerzy Brzywczy, Marta Piecho-Kabacik, Zuzana Krčkova, Jan Martinec, Anna Wawrzynska, Agnieszka Sirko

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
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  3. Review
  4. Article
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  6. Review
  7. Article
  8. Review
  9. Autophagy in plants.Autophagy reports · 2024
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  10. Article
  11. A Revised View of theInternational journal of molecular sciences · 2023
    Review
  12. Article
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  14. International journal of molecular sciences · 2022
    Article
  15. Exploring the Contribution of Autophagy to the Excess-Sucrose Response inInternational journal of molecular sciences · 2022
    Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Cargo Recognition and Function of Selective Autophagy Receptors in Plants.International journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Leszek Tarnowski *Institute of Biochemistry and Biophysics Polish Academy of Sciences, ul. Pawinskiego 5A, 02-106, Warsaw, Poland.
Milagros Collados Rodriguez *Institute of Biochemistry and Biophysics Polish Academy of Sciences, ul. Pawinskiego 5A, 02-106, Warsaw, Poland.
Jerzy BrzywczyInstitute of Biochemistry and Biophysics Polish Academy of Sciences, ul. Pawinskiego 5A, 02-106, Warsaw, Poland.
Marta Piecho-KabacikInstitute of Biochemistry and Biophysics Polish Academy of Sciences, ul. Pawinskiego 5A, 02-106, Warsaw, Poland.
Zuzana KrčkovaInstitute of Experimental Botany of the Czech Academy of Sciences, Rozvojova 263, 165 02, Prague 6, Czech Republic.
Jan MartinecInstitute of Experimental Botany of the Czech Academy of Sciences, Rozvojova 263, 165 02, Prague 6, Czech Republic.
Anna WawrzynskaInstitute of Biochemistry and Biophysics Polish Academy of Sciences, ul. Pawinskiego 5A, 02-106, Warsaw, Poland.
Agnieszka SirkoInstitute of Biochemistry and Biophysics Polish Academy of Sciences, ul. Pawinskiego 5A, 02-106, Warsaw, Poland. asirko@ibb.waw.pl.
Institute of Biochemistry and Biophysics, Polish Academy of Sciences · PLCzech Academy of Sciences, Institute of Experimental Botany · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant selective autophagy cargo receptor neighbour of breast cancer 1 gene (NBR1) has been scarcely studied in the context of abiotic stress. We wanted to expand this knowledge by using Arabidopsis thaliana lines with constitutive ectopic overexpression of the AtNBR1 gene (OX lines) and the AtNBR1 Knock-Out (KO lines). Transcriptomic analysis of the shoots and roots of one representative OX line indicated differences in gene expression relative to the parental (WT) line. In shoots, many differentially expressed genes, either up- or down-regulated, were involved in responses to stimuli and stress. In roots the most significant difference was observed in a set of downregulated genes that is mainly related to translation and formation of ribonucleoprotein complexes. The link between AtNBR1 overexpression and abscisic acid (ABA) signalling was suggested by an interaction network analysis of these differentially expressed genes. Most hubs of this network were associated with ABA signalling. Although transcriptomic analysis suggested enhancement of ABA responses, ABA levels were unchanged in the OX shoots. Moreover, some of the phenotypes of the OX (delayed germination, increased number of closed stomata) and the KO lines (increased number of lateral root initiation sites) indicate that AtNBR1 is essential for fine-tuning of the ABA signalling pathway. The interaction of AtNBR1 with three regulatory proteins of ABA pathway (ABI3, ABI4 and ABI5) was observed in planta. It suggests that AtNBR1 might play role in maintaining the balance of ABA signalling by controlling their level and/or activity.

Indexed as

AutophagySignal TransductionAbscisic AcidArabidopsisArabidopsis ProteinsCarrier ProteinsGene Expression Regulation, PlantGerminationPlants, Genetically ModifiedSeedlingsSeedsAbscisic AcidArabidopsis ProteinsCarrier ProteinsNBR1 protein, Arabidopsis

Identifiers

PMID32385330
PMCPMC7211012
OpenAlexW3020834789

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.