Evidence map›Paper›PMID 32384610›Full record

ArticleGenes2020

Efficient Generation and Correction of Mutations in Human iPS Cells Utilizing mRNAs of CRISPR Base Editors and Prime Editors.

Duran Sürün, Aksana Schneider, Jovan Mircetic, Katrin Neumann, Felix Lansing, Maciej Paszkowski-Rogacz, Vanessa Hänchen, Min Ae Lee-Kirsch, Frank Buchholz

Open access · goldAbstract read
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed, 1 pooled it
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 1 synthesis or guideline pooled it, 123 citations in OpenAlex.

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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Duran SürünMedical Systems Biology, Medical Faculty and University Hospital Carl Gustav Carus, TU Dresden, Germany.
Aksana SchneiderMedical Systems Biology, Medical Faculty and University Hospital Carl Gustav Carus, TU Dresden, Germany.ORCID 0000-0003-4108-1401
Jovan MirceticMedical Systems Biology, Medical Faculty and University Hospital Carl Gustav Carus, TU Dresden, Germany.
Katrin NeumannStem Cell Engineering Facility, Center for Molecular and Cellular Bioengineering (CMCB), TU Dresden, Germany.
Felix LansingMedical Systems Biology, Medical Faculty and University Hospital Carl Gustav Carus, TU Dresden, Germany.ORCID 0000-0001-9335-9749
Maciej Paszkowski-RogaczMedical Systems Biology, Medical Faculty and University Hospital Carl Gustav Carus, TU Dresden, Germany.ORCID 0000-0002-8245-6006
Vanessa HänchenDepartment of Pediatrics, Medical Faculty and University Hospital Carl Gustav Carus, TU Dresden, Germany.
Min Ae Lee-KirschDepartment of Pediatrics, Medical Faculty and University Hospital Carl Gustav Carus, TU Dresden, Germany.ORCID 0000-0002-4008-9869
Frank BuchholzMedical Systems Biology, Medical Faculty and University Hospital Carl Gustav Carus, TU Dresden, Germany.ORCID 0000-0002-4577-3344
University Hospital Carl Gustav Carus · DECenter for Systems Biology Dresden · DENational Center for Tumor Diseases · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In contrast to CRISPR/Cas9 nucleases, CRISPR base editors (BE) and prime editors (PE) enable predefined nucleotide exchanges in genomic sequences without generating DNA double strand breaks. Here, we employed BE and PE mRNAs in conjunction with chemically synthesized sgRNAs and pegRNAs for efficient editing of human induced pluripotent stem cells (iPSC). Whereas we were unable to correct a disease-causing mutation in patient derived iPSCs using a CRISPR/Cas9 nuclease approach, we corrected the mutation back to wild type with high efficiency utilizing an adenine BE. We also used adenine and cytosine BEs to introduce nine different cancer associated

Indexed as

CRISPR-Cas SystemsMutagenesisMutationAdenineAminohydrolasesAutoimmune Diseases of the Nervous SystemBase SequenceCell LineCellular Reprogramming TechniquesCRISPR-Associated Protein 9CytosineEmbryoid BodiesGene EditingGenes, p53HEK293 CellsHumansAdenineadenine deaminaseAminohydrolasesCRISPR-Associated Protein 9CytosineImidazolesnutlin 3PiperazinesRNA, Guide, CRISPR-Cas SystemsRNA, MessengerSAM Domain and HD Domain-Containing Protein 1SAMHD1 protein, humanbase editorsCRISPR/Cas9human induced pluripotent stem cellsmRNAprime editors

Identifiers

PMID32384610
PMCPMC7288465
OpenAlexW3023181423

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.