Evidence map›Paper›PMID 32383249›Full record

ArticleHuman mutation2020

Clinical validity of expanded carrier screening: Evaluating the gene-disease relationship in more than 200 conditions.

Marie Balzotti, Linyan Meng, Dale Muzzey, Katherine Johansen Taber, Kyle Beauchamp, Myriad Genetics Curation Team, Baylor Genetics Curation Team, Rebecca Mar-Heyming, Bethany Buckley, Krista Moyer

Open access · hybridAbstract read
In one paragraph

Article in Human mutation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 3 countries.

Marie BalzottiMyriad Women's Health, Myriad Genetics, South San Francisco, California.
Linyan MengDivision of Clinical Genomic Interpretation, Baylor Genetics, Houston, Texas.ORCID 0000-0001-7474-9178
Dale MuzzeyMyriad Women's Health, Myriad Genetics, South San Francisco, California.ORCID 0000-0001-8822-2035
Katherine Johansen TaberMyriad Women's Health, Myriad Genetics, South San Francisco, California.ORCID 0000-0003-3051-2667
Kyle BeauchampMyriad Women's Health, Myriad Genetics, South San Francisco, California.ORCID 0000-0001-6095-8788
Myriad Genetics Curation TeamMyriad Women's Health, Myriad Genetics, South San Francisco, California.
Baylor Genetics Curation TeamDivision of Clinical Genomic Interpretation, Baylor Genetics, Houston, Texas.
Rebecca Mar-HeymingMyriad Women's Health, Myriad Genetics, South San Francisco, California.
Bethany BuckleyMyriad Women's Health, Myriad Genetics, South San Francisco, California.
Krista MoyerMyriad Women's Health, Myriad Genetics, South San Francisco, California.ORCID 0000-0003-3857-9372
Myriad (Germany) · DEDirectorate-General for Interpretation · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clinical guidelines consider expanded carrier screening (ECS) to be an acceptable method of carrier screening. However, broader guideline support and payer adoption require evidence for associations between the genes on ECS panels and the conditions for which they aim to identify carriers. We applied a standardized framework for evaluation of gene-disease association to assess the clinical validity of conditions screened by ECS panels. The Clinical Genome Resource (ClinGen) gene curation framework was used to assess genetic and experimental evidence of associations between 208 genes and conditions screened on two commercial ECS panels. Twenty-one conditions were previously classified by ClinGen, and the remaining 187 were evaluated by curation teams at two laboratories. To ensure consistent application of the framework across the laboratories, concordance was evaluated on a subset of conditions. All 208 evaluated conditions met the evidence threshold for supporting a gene-disease association. Furthermore, 203 of 208 (98%) achieved the strongest ("Definitive") level of gene-disease association. All conditions evaluated by both commercial laboratories were similarly classified. Assessment using the ClinGen standardized framework revealed strong evidence of gene-disease association for conditions on two ECS panels. This result establishes the disease-level clinical validity of the panels considered herein.

Indexed as

Genetic Predisposition to DiseaseComputational BiologyGenetic Carrier ScreeningHeterozygoteHumanscarrier screeningclinGenclinical validitygene curationgene-disease curationrare disease

Identifiers

PMID32383249
PMCPMC7496796
OpenAlexW3022280943

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.