Evidence map›Paper›PMID 32382044›Full record

ArticleCommunications biology2020

Ultra-high throughput single-cell analysis of proteins and RNAs by split-pool synthesis.

Maeve O'Huallachain, Felice-Alessio Bava, Mary Shen, Carolina Dallett, Sri Paladugu, Nikolay Samusik, Simon Yu, Razika Hussein, Grantland R Hillman, Samuel Higgins and 10 more

Erratum issuedAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors.

Maeve O'HuallachainRoche Sequencing Solutions, Pleasanton, CA, USA.ORCID 0000-0002-0618-6032
Felice-Alessio BavaDepartment of Microbiology and Immunology, Baxter Laboratory for Stem Cell Research, Stanford University School of Medicine, Stanford, CA, USA.
Mary ShenRoche Sequencing Solutions, Pleasanton, CA, USA.
Carolina DallettRoche Sequencing Solutions, Pleasanton, CA, USA.
Sri PaladuguRoche Sequencing Solutions, Pleasanton, CA, USA.
Nikolay SamusikRoche Sequencing Solutions, Pleasanton, CA, USA.
Simon YuRoche Sequencing Solutions, Pleasanton, CA, USA.
Razika HusseinRoche Sequencing Solutions, Pleasanton, CA, USA.
Grantland R HillmanRoche Sequencing Solutions, Pleasanton, CA, USA.
Samuel HigginsRoche Sequencing Solutions, Pleasanton, CA, USA.
Melanie LouRoche Sequencing Solutions, Pleasanton, CA, USA.
Angelica TrejoDepartment of Microbiology and Immunology, Baxter Laboratory for Stem Cell Research, Stanford University School of Medicine, Stanford, CA, USA.
Laura QinRoche Sequencing Solutions, Pleasanton, CA, USA.
Yu Chuan TaiRoche Sequencing Solutions, Pleasanton, CA, USA.
Shigemi M KinoshitaDepartment of Microbiology and Immunology, Baxter Laboratory for Stem Cell Research, Stanford University School of Medicine, Stanford, CA, USA.
Astraea JagerDepartment of Microbiology and Immunology, Baxter Laboratory for Stem Cell Research, Stanford University School of Medicine, Stanford, CA, USA.
Deval LashkariApprise Biosciences, Menlo Park, CA, USA.
Yury GoltsevApprise Biosciences, Menlo Park, CA, USA.
Sedide OzturkRoche Sequencing Solutions, Pleasanton, CA, USA.
Garry P NolanRoche Sequencing Solutions, Pleasanton, CA, USA. gnolan@stanford.edu.

Funding

The Cellular Response to Elafin in PAHP01HL108797 · NHLBI · STANFORD UNIVERSITY · PI NOLAN, GARRY P · 2011 to 2021
$19.7M
High Throughput DNA Sequencer UpgradeS10OD018220 · OD · STANFORD UNIVERSITY · PI COLLER, JOHN · 2014 to 2014
$596k
NHLBI NIH HHS P01 HL108797NIH HHS S10 OD018220
6 · The paper itself

Abstract

Single-cell omics provide insight into cellular heterogeneity and function. Recent technological advances have accelerated single-cell analyses, but workflows remain expensive and complex. We present a method enabling simultaneous, ultra-high throughput single-cell barcoding of millions of cells for targeted analysis of proteins and RNAs. Quantum barcoding (QBC) avoids isolation of single cells by building cell-specific oligo barcodes dynamically within each cell. With minimal instrumentation (four 96-well plates and a multichannel pipette), cell-specific codes are added to each tagged molecule within cells through sequential rounds of classical split-pool synthesis. Here we show the utility of this technology in mouse and human model systems for as many as 50 antibodies to targeted proteins and, separately, >70 targeted RNA regions. We demonstrate that this method can be applied to multi-modal protein and RNA analyses. It can be scaled by expansion of the split-pool process and effectively renders sequencing instruments as versatile multi-parameter flow cytometers.

Indexed as

AnimalsAntibodiesHigh-Throughput Nucleotide SequencingHumansMiceMice, Inbred C57BLProteinsRNASingle-Cell AnalysisAntibodiesProteinsRNA

Identifiers

PMID32382044
PMCPMC7205613

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.