Evidence map›Paper›PMID 32381778›Full record

ArticleJournal of synchrotron radiation2020

Quantitative three-dimensional nondestructive imaging of whole anaerobic ammonium-oxidizing bacteria.

Meng Wen Peng, Yong Guan, Jian Hong Liu, Liang Chen, Han Wang, Zheng Zhe Xie, Hai Yan Li, You Peng Chen, Peng Liu, Peng Yan and 4 more

Open access · greenAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Journal of synchrotron radiation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 10 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Meng Wen PengKey Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, People's Republic of China.
Yong GuanNational Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei 230026, People's Republic of China.ORCID 0000-0002-7596-3114
Jian Hong LiuNational Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei 230026, People's Republic of China.
Liang ChenNational Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei 230026, People's Republic of China.
Han WangKey Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, People's Republic of China.
Zheng Zhe Xiei-Lab, Suzhou Institute of Nano-Tech and Nano-Bionics, Chinese Academy of Sciences, Suzhou 215123, People's Republic of China.
Hai Yan LiKey Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, People's Republic of China.
You Peng ChenKey Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, People's Republic of China.
Peng LiuSchool of Environmental Studies, China University of Geosciences, Wuhan 430074, People's Republic of China.
Peng YanKey Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, People's Republic of China.
Jin Song GuoKey Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, People's Republic of China.
Gang LiuNational Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei 230026, People's Republic of China.
Yu ShenNational Base of International Science and Technology Cooperation for Intelligent Manufacturing Service, Chongqing Technology and Business University, Chongqing 400067, People's Republic of China.
Fang FangKey Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, People's Republic of China.
Chongqing University · CNUniversity of Science and Technology of China · CNChina University of Geosciences · CNChinese Academy of Sciences · CNChongqing Technology and Business University · CN

Funding

Chongqing Science and Technology Commission cstc2018jcyjAX0366Chongqing Science and Technology Commission cstc2018jcyjAX0638Fundamental Research Funds for the Central Universities 2018CDQYCH0028Fundamental Research Funds for the Central Universities 2019CDCGHS311National Natural Science Foundation of China 21876016National Natural Science Foundation of China 51578527the National Key Research & Development Program of China 2016YFE0205600
6 · The paper itself

Abstract

Anaerobic ammonium-oxidizing (anammox) bacteria play a key role in the global nitrogen cycle and in nitrogenous wastewater treatment. The anammox bacteria ultrastructure is unique and distinctly different from that of other prokaryotic cells. The morphological structure of an organism is related to its function; however, research on the ultrastructure of intact anammox bacteria is lacking. In this study, in situ three-dimensional nondestructive ultrastructure imaging of a whole anammox cell was performed using synchrotron soft X-ray tomography (SXT) and the total variation-based simultaneous algebraic reconstruction technique (TV-SART). Statistical and quantitative analyses of the intact anammox bacteria were performed. High soft X-ray absorption composition inside anammoxosome was detected and verified to be relevant to iron-binding protein. On this basis, the shape adaptation of the anammox bacteria response to iron was explored.

Indexed as

AlgorithmsAmmonium CompoundsAnaerobiosisBacteriaCytoplasmic GranulesImage Processing, Computer-AssistedImaging, Three-DimensionalIn Situ Hybridization, FluorescenceMass SpectrometryMicroscopy, ConfocalOxidation-ReductionSoftwareSynchrotronsAmmonium Compoundsanammoxironsynchrotronthree-dimensional nondestructive-imaging

Identifiers

PMID32381778
PMCPMC7285686
OpenAlexW3016366208

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.