ArticleBMC plant biology2020
Genome-wide association mapping of Sclerotinia sclerotiorum resistance in soybean using whole-genome resequencing data.
Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed, 66 citations in OpenAlex.
- Identification and Fine-Mapping of a Novel LocusPlants (Basel, Switzerland) · 2025Article
- Co-option of transcription factors drives evolution of quantitative disease resistance against a necrotrophic pathogen.The Plant cell · 2025Article
- Assessment of potential candidate genes for partial resistance to Sclerotinia stem rot caused by Sclerotinia sclerotiorum using real-time quantitative PCR.The plant genome · 2025Article
- Comparative analysis of infected cassava root transcriptomics reveals candidate genes for root rot disease resistance.Scientific reports · 2024Article
- Genome-wide association study and haplotype analysis reveal novel candidate genes for resistance to powdery mildew in soybean.Frontiers in plant science · 2024Article
- High-Resolution Disease Phenotyping Reveals Distinct Resistance Mechanisms of Tomato Crop Wild Relatives againstPlant phenomics (Washington, D.C.) · 2024Article
- Genome-wide association study on resistance of cultivated soybean to Fusarium oxysporum root rot in Northeast China.BMC plant biology · 2023Article
- 3D-GBS: a universal genotyping-by-sequencing approach for genomic selection and other high-throughput low-cost applications in species with small to medium-sized genomes.Plant methods · 2023Article
- Genome-wide association study of powdery mildew resistance in cultivated soybean from Northeast China.Frontiers in plant science · 2023Article
- Identification of loci associated with water use efficiency and symbiotic nitrogen fixation in soybean.Frontiers in plant science · 2023Article
- Breeding for disease resistance in soybean: a global perspective.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Review
- The evolutionary and molecular features of the broad-host-range plant pathogen Sclerotinia sclerotiorum.Molecular plant pathology · 2022Review
- Molecular Breeding to Overcome Biotic Stresses in Soybean: Update.Plants (Basel, Switzerland) · 2022Review
- Genome-Wide Association Analysis and Gene Mining of Resistance to China Race 1 of Frogeye Leaf Spot in Soybean.Frontiers in plant science · 2022Article
- The SoyaGen Project: Putting Genomics to Work for Soybean Breeders.Frontiers in plant science · 2022Review
- Mapping Major Disease Resistance Genes in Soybean by Genome-Wide Association Studies.Methods in molecular biology (Clifton, N.J.) · 2022Review
- Sclerotinia sclerotiorum Thioredoxin1 (SsTrx1) is required for pathogenicity and oxidative stress tolerance.Molecular plant pathology · 2021Article
- A bumper crop of SNPs in soybean through high-density genotyping-by-sequencing (HD-GBS).Plant biotechnology journal · 2021Article
- Genome-wide association study for resistance to the Meloidogyne javanica causing root-knot nematode in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Genome-wide association study identifies candidate genes related to oleic acid content in soybean seeds.BMC plant biology · 2020Article
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSclerotinia stem rot (SSR), caused by Sclerotinia sclerotiorum (Lib.) de Bary, is an important cause of yield loss in soybean. Although many papers have reported different loci contributing to partial resistance, few of these were proved to reproduce the same phenotypic impact in different populations.
resultsIn this study, we identified a major quantitative trait loci (QTL) associated with resistance to SSR progression on the main stem by using a genome-wide association mapping (GWAM). A population of 127 soybean accessions was genotyped with 1.5 M SNPs derived from genotyping-by-sequencing (GBS) and whole-genome sequencing (WGS) ensuring an extensive genome coverage and phenotyped for SSR resistance. SNP-trait association led to discovery of a new QTL on chromosome 1 (Chr01) where resistant lines had shorter lesions on the stem by 29 mm. A single gene (Glyma.01 g048000) resided in the same LD block as the peak SNP, but it is of unknown function. The impact of this QTL was even more significant in the descendants of a cross between two lines carrying contrasted alleles for Chr01. Individuals carrying the resistance allele developed lesions almost 50% shorter than those bearing the sensitivity allele.
conclusionThese results suggest that the new region on chromosome 1 harbors a promising resistance QTL to SSR that can be used in soybean breeding program.
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