Evidence map›Paper›PMID 32379799›Full record

ArticlePloS one2020

Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae).

Fei Zhao, Bo Li, Bryan T Drew, Ya-Ping Chen, Qiang Wang, Wen-Bin Yu, En-De Liu, Yasaman Salmaki, Hua Peng, Chun-Lei Xiang

Abstract readComparative Study
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
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  12. Pharmacophylogenetic insights intoFrontiers in plant science · 2024
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  14. The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2023
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  15. The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2023
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  16. Article
  17. Article
  18. Pharmacophylogenetic study ofFrontiers in plant science · 2022
    Article
  19. Chloroplast Genomes of GenusFrontiers in genetics · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Fei ZhaoCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.
Bo LiResearch Centre of Ecological Sciences, College of Agronomy, Jiangxi Agricultural University, Nanchang, China.ORCID 0000-0003-1628-8128
Bryan T DrewDepartment of Biology, University of Nebraska at Kearney, Kearney, Nebraska, United States of America.
Ya-Ping ChenCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.
Qiang WangState Key Laboratory of Systematic & Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Xiangshan, Beijing, China.
Wen-Bin YuCenter for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, China.
En-De LiuCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.
Yasaman SalmakiCenter of Excellence in Phylogeny of Living Organisms and Department of Plant Sciences, School of Biology, College of Science, University of Tehran, Tehran, Iran.
Hua PengCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.
Chun-Lei XiangCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.ORCID 0000-0001-8775-6967

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Scutellaria, or skullcaps, are medicinally important herbs in China, India, Japan, and elsewhere. Though Scutellaria is the second largest and one of the more taxonomically challenging genera within Lamiaceae, few molecular systematic studies have been undertaken within the genus; in part due to a paucity of available informative markers. The lack of informative molecular markers for Scutellaria hinders our ability to accurately and robustly reconstruct phylogenetic relationships, which hampers our understanding of the diversity, phylogeny, and evolutionary history of this cosmopolitan genus. Comparative analyses of 15 plastomes, representing 14 species of subfamily Scutellarioideae, indicate that plastomes within Scutellarioideae contain about 151,000 nucleotides, and possess a typical quadripartite structure. In total, 590 simple sequence repeats, 489 longer repeats, and 16 hyper-variable regions were identified from the 15 plastomes. Phylogenetic relationships among the 14 species representing four of the five genera of Scutellarioideae were resolved with high support values, but the current infrageneric classification of Scutellaria was not supported in all analyses. Complete plastome sequences provide better resolution at an interspecific level than using few to several plastid markers in phylogenetic reconstruction. The data presented here will serve as a foundation to facilitate DNA barcoding, species identification, and systematic research within Scutellaria, which is an important medicinal plant resource worldwide.

Indexed as

Evolution, MolecularGenome, PlastidPhylogenyPlastidsScutellaria

Identifiers

PMID32379799
PMCPMC7205251

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.