Evidence map›Paper›PMID 32376827›Full record

ArticleNature communications2020

Disruption of ATRX-RNA interactions uncovers roles in ATRX localization and PRC2 function.

Wenqing Ren, Nicole Medeiros, Robert Warneford-Thomson, Phillip Wulfridge, Qingqing Yan, Joyce Bian, Simone Sidoli, Benjamin A Garcia, Emmanuel Skordalakes, Eric Joyce and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. ATRX: From Chromatin Remodeling to Disease.Genesis (New York, N.Y. : 2000) · 2025
    Review
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  10. Article
  11. Article
  12. Epigenetic factor competition reshapes the EMT landscape.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Epigenetic mechanisms regulate sex-specific bias in disease manifestations.Journal of molecular medicine (Berlin, Germany) · 2022
    Review
  14. Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Wenqing Ren *Gene expression and Regulation program, The Wistar Institute, Philadelphia, PA, 19104, USA.
Nicole Medeiros *Gene expression and Regulation program, The Wistar Institute, Philadelphia, PA, 19104, USA.
Robert Warneford-ThomsonEpigenetics Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA.ORCID http://orcid.org/0000-0002-4521-0568
Phillip WulfridgeGene expression and Regulation program, The Wistar Institute, Philadelphia, PA, 19104, USA.
Qingqing YanGene expression and Regulation program, The Wistar Institute, Philadelphia, PA, 19104, USA.
Joyce BianGene expression and Regulation program, The Wistar Institute, Philadelphia, PA, 19104, USA.
Simone SidoliEpigenetics Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA.ORCID http://orcid.org/0000-0001-9073-6641
Benjamin A GarciaEpigenetics Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Emmanuel SkordalakesGene expression and Regulation program, The Wistar Institute, Philadelphia, PA, 19104, USA.ORCID http://orcid.org/0000-0002-7600-2833
Eric JoyceEpigenetics Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Roberto BonasioEpigenetics Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA.ORCID http://orcid.org/0000-0002-0767-0889
Kavitha SarmaGene expression and Regulation program, The Wistar Institute, Philadelphia, PA, 19104, USA. kavitha@sarmalab.com.
The Wistar Institute · USUniversity of Pennsylvania · USAlbert Einstein College of Medicine · US

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
Shared Resources Core 2: Quantitative Proteomics CoreP01CA196539 · NCI · ROCKEFELLER UNIVERSITY · PI LEWIS, PETER W · 2015 to 2024
$17.6M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008216 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI EPSTEIN, DOUGLAS J · 1987 to 2023
$8.3M
Viral modulation of epitranscriptomic mechanismsR01AI118891 · NIAID · WASHINGTON UNIVERSITY · PI GARCIA, BENJAMIN A, WEITZMAN, MATTHEW D. · 2015 to 2025
$5.4M
Regulation of chromatin folding in space and timeR35GM128903 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Eric F. Joyce · 2018 to 2026
$4.2M
Epigenetic regulation through the formation and resolution of R loopsDP2NS105576 · NINDS · WISTAR INSTITUTE · PI SARMA, KAVITHA · 2017 to 2017
$2.9M
Understanding the Role of Combinatorial Histone PTM PatternsR01GM110174 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GARCIA, BENJAMIN A · 2014 to 2017
$1.3M
Function and RNA-mediated regulation of SCMH1 in Polycomb repressionR01GM127408 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BONASIO, ROBERTO · 2018 to 2021
$1.3M
NCI NIH HHS P01 CA196539NCI NIH HHS P30 CA010815NIAID NIH HHS R01 AI118891NIGMS NIH HHS R01 GM110174NIGMS NIH HHS R01 GM127408NIGMS NIH HHS R35 GM128903NIGMS NIH HHS T32 GM008216NINDS NIH HHS DP2 NS105576
6 · The paper itself

Abstract

Heterochromatin in the eukaryotic genome is rigorously controlled by the concerted action of protein factors and RNAs. Here, we investigate the RNA binding function of ATRX, a chromatin remodeler with roles in silencing of repetitive regions of the genome and in recruitment of the polycomb repressive complex 2 (PRC2). We identify ATRX RNA binding regions (RBRs) and discover that the major ATRX RBR lies within the N-terminal region of the protein, distinct from its PHD and helicase domains. Deletion of this ATRX RBR (ATRXΔRBR) compromises ATRX interactions with RNAs in vitro and in vivo and alters its chromatin binding properties. Genome-wide studies reveal that loss of RNA interactions results in a redistribution of ATRX on chromatin. Finally, our studies identify a role for ATRX-RNA interactions in regulating PRC2 localization to a subset of polycomb target genes.

Indexed as

AnimalsChromatinChromatin Assembly and DisassemblyFemaleFibroblastsHeterochromatinHistonesMethylationMicePolycomb Repressive Complex 2Protein BindingProtein DomainsRNAX-linked Nuclear ProteinAtrx protein, mouseChromatinHeterochromatinHistonesPolycomb Repressive Complex 2RNAX-linked Nuclear Protein

Identifiers

PMID32376827
PMCPMC7203109
OpenAlexW3022936839

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.