Evidence map›Paper›PMID 32375889›Full record

ArticleRespiratory research2020

Differences in airway microbiome and metabolome of single lung transplant recipients.

Nirmal S Sharma, Grant Vestal, Keith Wille, Kapil N Patel, Feng Cheng, Srinivas Tipparaju, Sultan Tousif, Mudassir M Banday, Xin Xu, Landon Wilson and 7 more

Open access · goldAbstract read
In one paragraph

Article in Respiratory research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Observational
  6. Article
  7. Beyond the organ: lung microbiome shapes transplant indications and outcomes.European journal of cardio-thoracic surgery : official journal of the European Association for Cardio-thoracic Surgery · 2024
    Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. The lung microbiome in lung transplantation.The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation · 2021
    Review
  14. Review
  15. Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Nirmal S SharmaCenter for Advanced Lung Disease and Lung Transplantation, University of South Florida, Tampa, FL, USA. nsharma21@bwh.harvard.edu.
Grant VestalCenter for Advanced Lung Disease and Lung Transplantation, University of South Florida, Tampa, FL, USA.
Keith WilleDivision of Pulmonary, Allergy and Critical Care Medicine, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.
Kapil N PatelCenter for Advanced Lung Disease and Lung Transplantation, University of South Florida, Tampa, FL, USA.
Feng ChengDepartment of Pharmaceutical Sciences, University of South Florida, Tampa, FL, USA.
Srinivas TipparajuDepartment of Pharmaceutical Sciences, University of South Florida, Tampa, FL, USA.
Sultan TousifDivision of Pulmonary, Allergy and Critical Care Medicine, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.
Mudassir M BandayCenter for Advanced Lung Disease and Lung Transplantation, University of South Florida, Tampa, FL, USA.
Xin XuDivision of Pulmonary, Allergy and Critical Care Medicine, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.
Landon WilsonMetabolomics Core, Microbiome Core, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.
Viswam S NairCenter for Advanced Lung Disease and Lung Transplantation, University of South Florida, Tampa, FL, USA.
Casey MorrowMetabolomics Core, Microbiome Core, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.
Don HayesDepartment of Pediatrics, The Ohio State University, Nationwide Children's Hospital, Columbus, OH, USA.
Andreas SeyfangDepartment of Molecular Medicine, University of South Florida, Tampa, FL, USA.
Stephen BarnesMetabolomics Core, Microbiome Core, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.
Jessy S DeshaneDivision of Pulmonary, Allergy and Critical Care Medicine, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.
Amit GaggarDivision of Pulmonary, Allergy and Critical Care Medicine, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.
University of Alabama at Birmingham · USUniversity of South Florida · USNationwide Children's Hospital · US

Funding

A Novel Proteolytic System of Pulmonary InflammationR01HL102371 · NHLBI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GAGGAR, AMIT · 2010 to 2021
$3.3M
Myeloid-Derived Regulatory Cells in AsthmaR01HL128502 · NHLBI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DESHANE, JESSY SATYADAS · 2016 to 2020
$1.8M
CSRD VA I01 CX001969Morsani College of Medicine USF NISNHLBI NIH HHS R01 HL102371NHLBI NIH HHS R01 HL128502School of Medicine, University of Alabama at Birmingham Angus cooper award
6 · The paper itself

Abstract

backgroundRecent studies suggest that alterations in lung microbiome are associated with occurrence of chronic lung diseases and transplant rejection. To investigate the host-microbiome interactions, we characterized the airway microbiome and metabolome of the allograft (transplanted lung) and native lung of single lung transplant recipients.

methodsBAL was collected from the allograft and native lungs of SLTs and healthy controls. 16S rRNA microbiome analysis was performed on BAL bacterial pellets and supernatant used for metabolome, cytokines and acetylated proline-glycine-proline (Ac-PGP) measurement by liquid chromatography-high-resolution mass spectrometry.

resultsIn our cohort, the allograft airway microbiome was distinct with a significantly higher bacterial burden and relative abundance of genera Acinetobacter & Pseudomonas. Likewise, the expression of the pro-inflammatory cytokine VEGF and the neutrophil chemoattractant matrikine Ac-PGP in the allograft was significantly higher. Airway metabolome distinguished the native lung from the allografts and an increased concentration of sphingosine-like metabolites that negatively correlated with abundance of bacteria from phyla Proteobacteria.

conclusionsAllograft lungs have a distinct microbiome signature, a higher bacterial biomass and an increased Ac-PGP compared to the native lungs in SLTs compared to the native lungs in SLTs. Airway metabolome distinguishes the allografts from native lungs and is associated with distinct microbial communities, suggesting a functional relationship between the local microbiome and metabolome.

Indexed as

Transplant RecipientsAgedAllograftsFemaleGene Regulatory NetworksHumansLungLung TransplantationMaleMetabolomeMicrobiotaMiddle Aged

Identifiers

PMID32375889
PMCPMC7201609
OpenAlexW3023053359

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.