Evidence map›Paper›PMID 32375541›Full record

ArticleRNA biology2020

Diversification of piRNAs expressed in PGCs and somatic cells during embryonic gonadal development.

Odei Barreñada, Daniel Fernández-Pérez, Eduardo Larriba, Miguel Brieño-Enriquez, Jesús Del Mazo

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Odei BarreñadaDepartment of Cellular & Molecular Biology, Centro De Investigaciones Biológicas C.I.B. (CSIC) , Madrid, Spain.ORCID 0000-0003-2908-8176
Daniel Fernández-PérezDepartment of Cellular & Molecular Biology, Centro De Investigaciones Biológicas C.I.B. (CSIC) , Madrid, Spain.ORCID 0000-0002-1679-6555
Eduardo LarribaDepartment of Cellular & Molecular Biology, Centro De Investigaciones Biológicas C.I.B. (CSIC) , Madrid, Spain.ORCID 0000-0001-8838-4974
Miguel Brieño-EnriquezDepartment of Cellular & Molecular Biology, Centro De Investigaciones Biológicas C.I.B. (CSIC) , Madrid, Spain.ORCID 0000-0002-8806-0918
Jesús Del MazoDepartment of Cellular & Molecular Biology, Centro De Investigaciones Biológicas C.I.B. (CSIC) , Madrid, Spain.ORCID 0000-0003-3269-3895
Centro de Investigaciones Biológicas Margarita Salas · ES

Funding

NIMA-like Kinase NEK1 as a Regulator of Mammalian GametogenesisR00HD090289 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI BRIENO-ENRIQUEZ, MIGUEL ANGEL · 2019 to 2021
$672k
NIMA-like kinase NEK1 as a regulator of mammalian gametogenesisK99HD090289 · NICHD · CORNELL UNIVERSITY · PI BRIENO-ENRIQUEZ, MIGUEL ANGEL · 2017 to 2018
$187k
NICHD NIH HHS K99 HD090289NICHD NIH HHS R00 HD090289
6 · The paper itself

Abstract

piRNAs are small non-coding RNAs known to play a main role in defence against transposable elements in germ cells. However, other potential functions, such as biogenesis and differences in somatic and germline expression of these regulatory elements, are not yet fully unravelled. Here, we analysed a variety of piRNA sequences detected in mouse male and female primordial germ cells (PGCs) and gonadal somatic cells at crucial stages during embryonic differentiation of germ cells (11.5-13.5 days post-coitum). NGS of sncRNA and bioinformatic characterization of piRNAs from PGCs and somatic cells, in addition to piRNAs associated with TEs, indicated functional diversification in both cell types. Differences in the proportion of the diverse types of piRNAs are detected between somatic and germline during development. However, the global diversified patterns of piRNA expression are mainly shared between germ and somatic cells, we identified piRNAs related with molecules involved in ribosome components and translation pathway, including piRNAs derived from rRNA (34%), tRNA (10%) and snoRNA (8%). piRNAs from both tRNA and snoRNA are mainly derived from 3' and 5' end regions. These connections between piRNAs and rRNAs, tRNAs or snoRNAs suggest important functions of specialized piRNAs in translation regulation during this window of gonadal development.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsChromosome MappingComputational BiologyDNA Transposable ElementsEmbryonic DevelopmentFemaleGenes, rRNAGenomicsGerm CellsGonadsMaleMiceRepetitive Sequences, Nucleic AcidRNA InterferenceRNA, Small InterferingDNA Transposable ElementsRNA, Small InterferingRNA, Transferembryonic gonadsPGCpiRNArRNAsnoRNAtransposable elementstRNA

Identifiers

PMID32375541
PMCPMC7549708
OpenAlexW3023879282

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.