Evidence map›Paper›PMID 32375395›Full record

ArticleJournal of clinical medicine2020

Genome-Wide Analysis of the DNA Methylation Profile Identifies the Fragile Histidine Triad (

Tae-Oh Kim, Dong-Il Park, Yu Kyeong Han, Keunsoo Kang, Sae-Gwang Park, Hae Ryoun Park, Joo Mi Yi

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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  12. Vitamin D Modulates Intestinal Microbiota in Inflammatory Bowel Diseases.International journal of molecular sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Tae-Oh KimDepartment of Internal Medicine, Inje University, Haeundae Paik Hospital, Busan 48108, Korea.
Dong-Il ParkDepartment of Internal Medicine, Kangbuk Samsung Hospital, Sungkyunkwan University School of Medicine, Seoul 03181, Korea.
Yu Kyeong HanDepartment of Microbiology and Immunology, College of Medicine, Inje University, Busan 47392, Korea.
Keunsoo KangDepartment of Microbiology, Dankook University, Cheonan 31116, Korea.ORCID 0000-0003-0611-9320
Sae-Gwang ParkDepartment of Microbiology and Immunology, College of Medicine, Inje University, Busan 47392, Korea.
Hae Ryoun ParkDepartment of Oral Pathology, School of Dentistry, Pusan National University, Yangsan, Gyeongsangnam do 50612, Korea.ORCID 0000-0003-1908-0824
Joo Mi YiDepartment of Microbiology and Immunology, College of Medicine, Inje University, Busan 47392, Korea.
Inje University · KRDankook University · KRInje University Haeundae Paik Hospital · KRKangbuk Samsung Hospital · KRPusan National University · KR

Funding

Ministry of Health & Welfare Republic of Korea 1720100National Research Foundation of Korea NRF-2019R1A2C1008502
6 · The paper itself

Abstract

Inflammatory bowel disease is known to be associated with a genetic predisposition involving multiple genes; however, there is growing evidence that abnormal interactions with environmental factors, particularly epigenetic factors, can also significantly contribute to the development of inflammatory bowel disease (IBD). Although many genome-wide association studies have been performed to identify the genetic changes underlying the pathogenesis of Crohn's disease, the role of epigenetic alterations based on molecular complications arising from Crohn's disease (CD) is poorly understood. We employed an unbiased approach to define DNA methylation alterations in colonoscopy samples from patients with CD using the HumanMethylation450K BeadChip platform. Technical and functional validation was performed by methylation-specific PCR (MSP) and bisulfite sequencing of a validation set of 207 patients with CD samples. Immunohistochemistry (IHC) analysis was performed in the representative sample sets. DNA methylation profile in CD revealed that 135 probes (24 hypermethylated and 111 hypomethylated probes) were differentially methylated. We validated the methylation levels of 19 genes that showed hypermethylation in patients with CD compared with normal controls. We uniquely identified that the fragile histidine triad (

Indexed as

Crohn’s disease (CD), hypermethylationDNA methylation profilegene network

Identifiers

PMID32375395
PMCPMC7291297
OpenAlexW3021157232

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.