ArticleScientific data2020
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
Erratum issuedAbstract read
In one paragraph
Article in Scientific data, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 74 papers, 1 of them a synthesis that pooled it.
0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed, 1 pooled it
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
74 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Molecular exploration of host-pathogen interactions in severeFrontiers in medicine · 2025Pooled it
- An open problem: Why are motif-avoidant attractors so rare in asynchronous Boolean networks?Journal of mathematical biology · 2025Article
- FAIR assessment of Disease Maps fosters open science and scientific crowdsourcing in systems biomedicine.Scientific data · 2025Article
- Sustainable software development in science - insights from 20 years of Vanted.Journal of integrative bioinformatics · 2025Article
- Homeostasis imbalance process ontology: a study on COVID-19 infectious processes.BMC medical informatics and decision making · 2024Article
- Comprehensive molecular interaction map of TGFβ induced epithelial to mesenchymal transition in breast cancer.NPJ systems biology and applications · 2024Article
- Context-Specific Genome-Scale Metabolic Modelling and Its Application to the Analysis of COVID-19 Metabolic Signatures.Metabolites · 2023Review
- Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches.Frontiers in immunology · 2023Article
- COVID-19 in Ontario Long-term Care Facilities Project, a manually curated and validated database.Frontiers in public health · 2023Article
- The role of SARS-CoV-2 accessory proteins in immune evasion.Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie · 2022Review
- Non-uniform aspects of the SARS-CoV-2 intraspecies evolution reopen question of its origin.International journal of biological macromolecules · 2022Article
- A novel logical model of COVID-19 intracellular infection to support therapies development.PLoS computational biology · 2022Article
- Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology.Briefings in bioinformatics · 2022Article
- Design considerations for representing systems biology information with the Systems Biology Graphical Notation.Journal of integrative bioinformatics · 2022Article
- Discovering potential interactions between rare diseases and COVID-19 by combining mechanistic models of viral infection with statistical modeling.Human molecular genetics · 2022Article
- PubChem Protein, Gene, Pathway, and Taxonomy Data Collections: Bridging Biology and Chemistry through Target-Centric Views of PubChem Data.Journal of molecular biology · 2022Article
- CoV2K model, a comprehensive representation of SARS-CoV-2 knowledge and data interplay.Scientific data · 2022Article
- Identification of Key Pathways and Genes in SARS-CoV-2 Infecting Human Intestines by Bioinformatics Analysis.Biochemical genetics · 2022Article
- Building digital twins of the human immune system: toward a roadmap.NPJ digital medicine · 2022Review
- Exploring attractor bifurcations in Boolean networks.BMC bioinformatics · 2022Article
14 more citing papers are in PubMed but not listed here.
Corrections and comments
- Erratum issued
Authors and funding
25 authors.
Marek OstaszewskiLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Belvaux, Luxembourg.ORCID http://orcid.org/0000-0003-1473-370X
Alexander MazeinLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Belvaux, Luxembourg.ORCID http://orcid.org/0000-0001-7137-4171
Marc E GillespieOntario Institute for Cancer Research, Toronto, Canada.ORCID http://orcid.org/0000-0002-5766-1702
Inna KupersteinInstitut Curie, PSL Research University, Mines Paris Tech, Inserm, Paris, France.
Anna NiarakisDepartment of Biology, Univ. Évry, University of Paris-Saclay, Genopole, 91025, Évry, France.ORCID http://orcid.org/0000-0002-9687-7426
Henning HermjakobEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK.ORCID http://orcid.org/0000-0001-8479-0262
Alexander R PicoInstitute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, United States.
Egon L WillighagenDepartment of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, The Netherlands.ORCID http://orcid.org/0000-0001-7542-0286
Chris T EveloDepartment of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, The Netherlands.
Jan HasenauerHelmholtz Zentrum München, Institute of Computational Biology, Neuherberg, Germany.
Falk SchreiberUniversity of Konstanz, Department of Computer and Information Science, Konstanz, Germany.
Andreas DrägerComputational Systems Biology of Infection and Antimicrobial-Resistant Pathogens, Institute for Bioinformatics and Medical Informatics (IBMI), University of Tübingen, 72076, Tübingen, Germany.ORCID http://orcid.org/0000-0002-1240-5553
Emek DemirDepartment of Molecular and Medical Genetics, School of Medicine, Oregon Health & Science University, Portland, USA.
Olaf WolkenhauerDepartment of Systems Biology & Bioinformatics, University of Rostock, Rostock, Germany.
Laura I FurlongResearch Programme on Biomedical Informatics, Hospital del Mar Medical Research Institute, Department of Experimental and Health Sciences, Pompeu Fabra University, Barcelona, Spain.
Emmanuel BarillotInstitut Curie, PSL Research University, Mines Paris Tech, Inserm, Paris, France.ORCID http://orcid.org/0000-0003-2724-2002
Joaquin DopazoClinical Bioinformatics Area, Fundación Progreso y Salud. Hosp. Virgen del Rocío, Sevilla, Spain.ORCID http://orcid.org/0000-0003-3318-120X
Aurelio Orta-ResendizHIV, Inflammation and Persistence Unit, Virology Department, Institut Pasteur, Paris, France.ORCID http://orcid.org/0000-0002-6632-883X
Francesco MessinaDipartimento di Epidemiologia Ricerca Pre-Clinica e Diagnostica Avanzata, National Institute for Infectious Diseases "Lazzaro Spallanzani" I.R.C.C.S., Rome, Italy.ORCID http://orcid.org/0000-0001-8076-7217
Alfonso ValenciaBarcelona Supercomputing Center (BSC), Barcelona, Spain.
Akira FunahashiDepartment of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, Japan.ORCID http://orcid.org/0000-0003-0605-239X
Hiroaki KitanoThe Systems Biology Institute, Shinagawa, Tokyo, Japan.
Charles AuffrayEuropean Institute for Systems Biology and Medicine (EISBM), Vourles, France.ORCID http://orcid.org/0000-0003-2226-7411
Rudi BallingLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Belvaux, Luxembourg.
Reinhard SchneiderLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Belvaux, Luxembourg. reinhard.schneider@uni.lu.ORCID http://orcid.org/0000-0002-8278-1618
Funding
TR&D 3 - Network Guided Machine LearningP41GM103504 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI IDEKER, TREY · 2012 to 2024
$17.3MNIGMS NIH HHS P41 GM103504
Abstract
PubMed holds no abstract for this paper.
Indexed as
BetacoronavirusCoronavirus InfectionsHost Microbial InteractionsHost-Pathogen InteractionsPandemicsPneumonia, ViralComputational BiologyCOVID-19Databases, FactualHumansInternational CooperationModels, BiologicalSARS-CoV-2
Identifiers
What OpenQuestion holds
Textmetadata
LicenceCC BY
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.