Evidence map›Paper›PMID 32371486›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Structural basis of nanobody recognition of grapevine fanleaf virus and of virus resistance loss.

Igor Orlov, Caroline Hemmer, Léa Ackerer, Bernard Lorber, Ahmed Ghannam, Vianney Poignavent, Kamal Hleibieh, Claude Sauter, Corinne Schmitt-Keichinger, Lorène Belval and 12 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. VInternational journal of molecular sciences · 2022
    Review
  5. Article
  6. Review
  7. Review
  8. Exploring cellular biochemistry with nanobodies.The Journal of biological chemistry · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 2 countries.

Igor OrlovCentre for Integrative Biology (CBI), Department of Integrated Structural Biology, IGBMC, Université de Strasbourg, 67404 Illkirch, France.
Caroline HemmerInstitut de Biologie Moléculaire des Plantes, UPR2357 du Centre National de la Recherche Scientifique, Université de Strasbourg, F-67084 Strasbourg, France.
Léa AckererInstitut de Biologie Moléculaire des Plantes, UPR2357 du Centre National de la Recherche Scientifique, Université de Strasbourg, F-67084 Strasbourg, France.
Bernard LorberUniversité de Strasbourg, Architecture et Réactivité de l'ARN, UPR 9002, Centre National de la Recherche Scientifique, Institut de Biologie Moléculaire et Cellulaire, F-67084 Strasbourg, France.ORCID 0000-0002-4672-9652
Ahmed GhannamInstitut de Biologie Moléculaire des Plantes, UPR2357 du Centre National de la Recherche Scientifique, Université de Strasbourg, F-67084 Strasbourg, France.
Vianney PoignaventInstitut de Biologie Moléculaire des Plantes, UPR2357 du Centre National de la Recherche Scientifique, Université de Strasbourg, F-67084 Strasbourg, France.
Kamal HleibiehInstitut de Biologie Moléculaire des Plantes, UPR2357 du Centre National de la Recherche Scientifique, Université de Strasbourg, F-67084 Strasbourg, France.
Claude SauterUniversité de Strasbourg, Architecture et Réactivité de l'ARN, UPR 9002, Centre National de la Recherche Scientifique, Institut de Biologie Moléculaire et Cellulaire, F-67084 Strasbourg, France.ORCID 0000-0002-8766-287X
Corinne Schmitt-KeichingerInstitut de Biologie Moléculaire des Plantes, UPR2357 du Centre National de la Recherche Scientifique, Université de Strasbourg, F-67084 Strasbourg, France.ORCID 0000-0003-1642-0221
Lorène BelvalUniversité de Strasbourg, Institut National de Recherche pour L'Agriculture, L'Alimentation et L'Environnement, Santé de la Vigne et Qualité du Vin, UMR-A 1131, 68000 Colmar, France.
Jean-Michel HilyUniversité de Strasbourg, Institut National de Recherche pour L'Agriculture, L'Alimentation et L'Environnement, Santé de la Vigne et Qualité du Vin, UMR-A 1131, 68000 Colmar, France.ORCID 0000-0001-9141-9701
Aurélie MarmonierUniversité de Strasbourg, Institut National de Recherche pour L'Agriculture, L'Alimentation et L'Environnement, Santé de la Vigne et Qualité du Vin, UMR-A 1131, 68000 Colmar, France.
Véronique KomarUniversité de Strasbourg, Institut National de Recherche pour L'Agriculture, L'Alimentation et L'Environnement, Santé de la Vigne et Qualité du Vin, UMR-A 1131, 68000 Colmar, France.
Sophie GerschUniversité de Strasbourg, Institut National de Recherche pour L'Agriculture, L'Alimentation et L'Environnement, Santé de la Vigne et Qualité du Vin, UMR-A 1131, 68000 Colmar, France.
Pascale SchellenbergerInstitut de Biologie Moléculaire des Plantes, UPR2357 du Centre National de la Recherche Scientifique, Université de Strasbourg, F-67084 Strasbourg, France.
Patrick BronCentre de Biochimie Structurale Centre National de la Recherche Scientifique, Institut National de la Santé et de la Recherche Médicale, 34090 Montpellier, France.
Emmanuelle VigneUniversité de Strasbourg, Institut National de Recherche pour L'Agriculture, L'Alimentation et L'Environnement, Santé de la Vigne et Qualité du Vin, UMR-A 1131, 68000 Colmar, France.ORCID 0000-0002-3287-0786
Serge MuyldermansCellular and Molecular Immunology, Vrije Universiteit Brussel, 1050 Brussels, Belgium.ORCID 0000-0002-3678-3575
Olivier LemaireUniversité de Strasbourg, Institut National de Recherche pour L'Agriculture, L'Alimentation et L'Environnement, Santé de la Vigne et Qualité du Vin, UMR-A 1131, 68000 Colmar, France.
Gérard DemangeatUniversité de Strasbourg, Institut National de Recherche pour L'Agriculture, L'Alimentation et L'Environnement, Santé de la Vigne et Qualité du Vin, UMR-A 1131, 68000 Colmar, France.
Christophe RitzenthalerInstitut de Biologie Moléculaire des Plantes, UPR2357 du Centre National de la Recherche Scientifique, Université de Strasbourg, F-67084 Strasbourg, France; ritzenth@unistra.fr klaholz@igbmc.fr.ORCID 0000-0001-7121-2359
Bruno P KlaholzCentre for Integrative Biology (CBI), Department of Integrated Structural Biology, IGBMC, Université de Strasbourg, 67404 Illkirch, France; ritzenth@unistra.fr klaholz@igbmc.fr.ORCID 0000-0001-8674-8674
Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRInstitut de Biologie Moléculaire des Plantes · FRArchitecture et Réactivité de l'arN · FRCentre National de la Recherche Scientifique · FRInserm · FRVrije Universiteit Brussel · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Grapevine fanleaf virus (GFLV) is a picorna-like plant virus transmitted by nematodes that affects vineyards worldwide. Nanobody (Nb)-mediated resistance against GFLV has been created recently, and shown to be highly effective in plants, including grapevine, but the underlying mechanism is unknown. Here we present the high-resolution cryo electron microscopy structure of the GFLV-Nb23 complex, which provides the basis for molecular recognition by the Nb. The structure reveals a composite binding site bridging over three domains of one capsid protein (CP) monomer. The structure provides a precise mapping of the Nb23 epitope on the GFLV capsid in which the antigen loop is accommodated through an induced-fit mechanism. Moreover, we uncover and characterize several resistance-breaking GFLV isolates with amino acids mapping within this epitope, including C-terminal extensions of the CP, which would sterically interfere with Nb binding. Escape variants with such extended CP fail to be transmitted by nematodes linking Nb-mediated resistance to vector transmission. Together, these data provide insights into the molecular mechanism of Nb23-mediated recognition of GFLV and of virus resistance loss.

Indexed as

AnimalsAntibodies, ViralCapsidCapsid ProteinsCryoelectron MicroscopyEpitopesModels, MolecularNematodaNepovirusPlant DiseasesPlant LeavesPlant VirusesProtein ConformationSingle-Chain AntibodiesVitisAntibodies, ViralCapsid ProteinsEpitopesSingle-Chain AntibodiesGFLVnanobodystructural biologyvirus

Identifiers

PMID32371486
PMCPMC7245083
OpenAlexW3021558885

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.