Evidence map›Paper›PMID 32371483›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Neutron crystallography of copper amine oxidase reveals keto/enolate interconversion of the quinone cofactor and unusual proton sharing.

Takeshi Murakawa, Kazuo Kurihara, Mitsuo Shoji, Chie Shibazaki, Tomoko Sunami, Taro Tamada, Naomine Yano, Taro Yamada, Katsuhiro Kusaka, Mamoru Suzuki and 7 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Microcrystal preparation for serial femtosecond X-ray crystallography of bacterial copper amine oxidase.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 1 country.

Takeshi MurakawaDepartment of Biochemistry, Osaka Medical College, 569-8686 Takatsuki, Osaka, Japan; murakawa@osaka-med.ac.jp tokajima@sanken.osaka-u.ac.jp.ORCID 0000-0001-5905-532X
Kazuo KuriharaInstitute for Quantum Life Science, National Institutes for Quantum and Radiological Science and Technology, 319-1106 Tokai, Ibaraki, Japan.ORCID 0000-0003-0695-2187
Mitsuo ShojiCenter for Computational Sciences, University of Tsukuba, 305-8577 Tsukuba, Ibaraki, Japan.ORCID 0000-0001-7465-6326
Chie ShibazakiInstitute for Quantum Life Science, National Institutes for Quantum and Radiological Science and Technology, 319-1106 Tokai, Ibaraki, Japan.
Tomoko SunamiInstitute for Quantum Life Science, National Institutes for Quantum and Radiological Science and Technology, 319-1106 Tokai, Ibaraki, Japan.
Taro TamadaInstitute for Quantum Life Science, National Institutes for Quantum and Radiological Science and Technology, 319-1106 Tokai, Ibaraki, Japan.ORCID 0000-0003-1419-8022
Naomine YanoFrontier Research Center for Applied Atomic Sciences, Ibaraki University, 319-1106 Tokai, Ibaraki, Japan.ORCID 0000-0001-9774-6885
Taro YamadaFrontier Research Center for Applied Atomic Sciences, Ibaraki University, 319-1106 Tokai, Ibaraki, Japan.
Katsuhiro KusakaFrontier Research Center for Applied Atomic Sciences, Ibaraki University, 319-1106 Tokai, Ibaraki, Japan.
Mamoru SuzukiInstitute for Protein Research, Osaka University, 565-0871 Suita, Osaka, Japan.
Yasuteru ShigetaCenter for Computational Sciences, University of Tsukuba, 305-8577 Tsukuba, Ibaraki, Japan.
Ryota KurokiQuantum Beam Science Center, Japan Atomic Energy Agency, 319-1195 Tokai, Ibaraki, Japan.
Hideyuki HayashiDepartment of Chemistry, Osaka Medical College, 569-8686 Takatsuki, Osaka, Japan.ORCID 0000-0002-4073-3028
Takato YanoDepartment of Biochemistry, Osaka Medical College, 569-8686 Takatsuki, Osaka, Japan.ORCID 0000-0002-9720-8339
Katsuyuki TanizawaInstitute of Scientific and Industrial Research, Osaka University, 567-0047 Ibaraki, Osaka, Japan.
Motoyasu AdachiInstitute for Quantum Life Science, National Institutes for Quantum and Radiological Science and Technology, 319-1106 Tokai, Ibaraki, Japan.
Toshihide OkajimaDepartment of Chemistry, Osaka Medical College, 569-8686 Takatsuki, Osaka, Japan; murakawa@osaka-med.ac.jp tokajima@sanken.osaka-u.ac.jp.ORCID 0000-0003-1733-9580
National Institutes for Quantum Science and Technology · JPOsaka Medical and Pharmaceutical University · JPIbaraki University · JPUniversity of Tsukuba · JPJapan Atomic Energy Agency · JPOsaka Research Institute of Industrial Science and Technology · JPProtein Research Foundation · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent advances in neutron crystallographic studies have provided structural bases for quantum behaviors of protons observed in enzymatic reactions. Thus, we resolved the neutron crystal structure of a bacterial copper (Cu) amine oxidase (CAO), which contains a prosthetic Cu ion and a protein-derived redox cofactor, topa quinone (TPQ). We solved hitherto unknown structures of the active site, including a keto/enolate equilibrium of the cofactor with a nonplanar quinone ring, unusual proton sharing between the cofactor and the catalytic base, and metal-induced deprotonation of a histidine residue that coordinates to the Cu. Our findings show a refined active-site structure that gives detailed information on the protonation state of dissociable groups, such as the quinone cofactor, which are critical for catalytic reactions.

Indexed as

Amine Oxidase (Copper-Containing)Bacterial ProteinsCatalytic DomainCoenzymesNeutron DiffractionProtonsQuinonesAmine Oxidase (Copper-Containing)Bacterial ProteinsCoenzymesProtonsQuinonescopper amine oxidasemetal-induced deprotonationneutron crystallographyproton sharingquinone cofactor

Identifiers

PMID32371483
PMCPMC7245091
OpenAlexW3022940484

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.