ArticleG3 (Bethesda, Md.)2020
Improving Prediction Accuracy Using Multi-allelic Haplotype Prediction and Training Population Optimization in Wheat.
Article in G3 (Bethesda, Md.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Efficiency under epistasis of haplotype-based genomic selection for pure line breeding.Heredity · 2026Article
- Advances in tea breeding in Japan: from traditional methods to genomic approaches.Breeding science · 2026Article
- Exploring the potential of naked barley to manage deoxynivalenol accumulation from Fusarium head blight.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Haplotype applications in genomic selection.Genome biology · 2026Review
- HaploVar: An R package for defining local haplotype variants for trait association and trait prediction analyses.Bioinformatics (Oxford, England) · 2025Article
- Association mapping and genomic prediction for processing and end-use quality traits in wheat (Triticum aestivum L.).The plant genome · 2025Article
- Review
- Genomic prediction within and across maize landrace derived populations using haplotypes.Frontiers in plant science · 2024Article
- The importance of genotyping within the climate-smart plant breeding value chain - integrative tools for genetic enhancement programs.Frontiers in plant science · 2024Review
- Natural and artificial selection of multiple alleles revealed through genomic analyses.Frontiers in genetics · 2023Article
- Genomic prediction with haplotype blocks in wheat.Frontiers in plant science · 2023Article
- Developing core marker sets for effective genomic-assisted selection in wheat and barley breeding programs.Breeding science · 2022Article
- Prediction ability of genome-wide markers in Pinus taeda L. within and between population is affected by relatedness to the training population and trait genetic architecture.G3 (Bethesda, Md.) · 2022Article
- Features and applications of haplotypes in crop breeding.Communications biology · 2021Review
- Haplotype genomic prediction of phenotypic values based on chromosome distance and gene boundaries using low-coverage sequencing in Duroc pigs.Genetics, selection, evolution : GSE · 2021Article
- Achievements and Challenges of Genomics-Assisted Breeding in Forest Trees: From Marker-Assisted Selection to Genome Editing.International journal of molecular sciences · 2021Review
- Haplotype- and SNP-Based GWAS for Growth and Wood Quality Traits inPlants (Basel, Switzerland) · 2021Article
- Can Cross-Country Genomic Predictions Be a Reasonable Strategy to Support Germplasm Exchange? - A Case Study With Hydrogen Cyanide in Cassava.Frontiers in plant science · 2021Article
- Haplotype Analysis of Genomic Prediction Using Structural and Functional Genomic Information for Seven Human Phenotypes.Frontiers in genetics · 2020Article
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The use of haplotypes may improve the accuracy of genomic prediction over single SNPs because haplotypes can better capture linkage disequilibrium and genomic similarity in different lines and may capture local high-order allelic interactions. Additionally, prediction accuracy could be improved by portraying population structure in the calibration set. A set of 383 advanced lines and cultivars that represent the diversity of the University of Minnesota wheat breeding program was phenotyped for yield, test weight, and protein content and genotyped using the Illumina 90K SNP Assay. Population structure was confirmed using single SNPs. Haplotype blocks of 5, 10, 15, and 20 adjacent markers were constructed for all chromosomes. A multi-allelic haplotype prediction algorithm was implemented and compared with single SNPs using both
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