Evidence map›Paper›PMID 32368904›Full record

ArticleAnalytical chemistry2020

High-Precision, Gas-Phase Hydrogen/Deuterium-Exchange Kinetics by Mass Spectrometry Enabled by Exchange Standards.

Sanjit S Uppal, Abhigya Mookherjee, Rick Harkewicz, Sarah E Beasley, Matthew F Bush, Miklos Guttman

Open access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Linkage Memory in Underivatized Protonated Carbohydrates.Journal of the American Society for Mass Spectrometry · 2021
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Sanjit S UppalDepartment of Medicinal Chemistry, University of Washington, Seattle, Washington 98195, United States.ORCID 0000-0002-4288-7864
Abhigya MookherjeeDepartment of Medicinal Chemistry, University of Washington, Seattle, Washington 98195, United States.ORCID 0000-0003-0897-8153
Rick HarkewiczDepartment of Medicinal Chemistry, University of Washington, Seattle, Washington 98195, United States.
Sarah E BeasleyDepartment of Medicinal Chemistry, University of Washington, Seattle, Washington 98195, United States.
Matthew F BushDepartment of Chemistry, University of Washington, Seattle, Washington 98195, United States.ORCID 0000-0003-3526-4973
Miklos GuttmanDepartment of Medicinal Chemistry, University of Washington, Seattle, Washington 98195, United States.ORCID 0000-0003-2419-1334
University of Washington · US

Funding

Hybrid structural mass spectrometry for rapid site-specific glycan structural elucidationR01GM127579 · NIGMS · UNIVERSITY OF WASHINGTON · PI GUTTMAN, MIKLOS · 2018 to 2021
$1.7M
NIGMS NIH HHS R01 GM127579
6 · The paper itself

Abstract

Mass spectrometry (MS) has become a primary tool for identifying and quantifying biological molecules. In combination with other orthogonal techniques, such as gas-phase hydrogen/deuterium exchange (gHDX), MS is also capable of probing the structure of ions. However, gHDX kinetics can depend strongly on many factors, including laboratory temperature, instrumental conditions, and instrument platform selection. These effects can lead to high variability with gHDX measurements, which has hindered the broader adoption of gHDX for structural MS. Here we introduce an approach for standardizing gHDX measurements using cosampled standards. Quantifying the exchange kinetics for analytes relative to the exchange kinetics of the standards results in greater accuracy and precision than the underlying absolute measurements. The standardization was found to be effective for several types of analytes including small molecules and intact proteins. A subset of analytes showed deviations in their standardized exchange profiles that are attributed to field heating and the concomitant conformational isomerization. Inclusion of helium during the gHDX process for collisional cooling helps mitigate such variations in exchange kinetics related to ion heating. We anticipate that the outcomes of this research will enable the broader use of gHDX in MS-based workflows for molecular identification and isomer differentiation.

Indexed as

Deuterium Exchange MeasurementKineticsMass SpectrometryMolecular StructureOrganic ChemicalsProteinsOrganic ChemicalsProteins

Identifiers

PMID32368904
PMCPMC7333526
OpenAlexW3023846963

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.