Evidence map›Paper›PMID 32368594›Full record

ArticleData in brief2020

Transcriptomic data indicating differential expressed genes between HIV-1 Associated Nephropathy (HIVAN) mouse model (Tg26) and wildtype mice.

V Praveen Chakravarthi, Sireesha Yerrathota, Priyanka Radadiya, Clark Bloomer, Sumedha Gunewardhana, Madhulika Sharma

Open access · goldAbstract read
In one paragraph

Article in Data in brief, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

V Praveen ChakravarthiDepartment of Pathology and Laboratory Medicine, University of Kansas Medical Center, Kansas City, KS, United States.
Sireesha YerrathotaDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS 66160, United States.
Priyanka RadadiyaDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS 66160, United States.
Clark BloomerDepartment of Molecular and Integrative Physiology, University of Kansas Medical Center, Kansas City, KS, United States.
Sumedha GunewardhanaDepartment of Molecular and Integrative Physiology, University of Kansas Medical Center, Kansas City, KS, United States.
Madhulika SharmaDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS 66160, United States.
University of Kansas Medical Center · US

Funding

Implications of Notch signaling in HIV associated nephropathyR01DK108433 · NIDDK · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SHARMA, MADHULIKA · 2015 to 2019
$743k
NIDDK NIH HHS R01 DK108433
6 · The paper itself

Abstract

Tg26 mice are robust models of human immunodeficiency virus 1 associated nephropathy (HIVAN). These mice are useful for HIVAN pathology analysis, and recent studies suggest that the Tg26 mouse model is an excellent model of other chronic kidney diseases. We performed RNA seq analysis of differential gene expression in the kidneys of Tg26 mice. Kidneys were collected from Tg26 mice and wildtype (WT) littermates at 3 months of age. The raw data were analyzed for differential gene expression using a negative binomial generalized linear model in the DeSeq2 software package. We used

Indexed as

Chronic kidney diseaseHIVANInflammationTg26

Identifiers

PMID32368594
PMCPMC7186506
OpenAlexW3016839890

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.