Evidence map›Paper›PMID 32367404›Full record

ArticleHuman genetics2020

An exome-first approach to aid in the diagnosis of primary ciliary dyskinesia.

Hanan E Shamseldin, Ibrahim Al Mogarri, Mansour M Alqwaiee, Adel S Alharbi, Khaled Baqais, Muslim AlSaadi, Talal AlAnzi, Amal Alhashem, Afaf Saghier, Waleed Ameen and 6 more

Abstract read
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In one paragraph

Article in Human genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Article
  4. Article
  5. A novel pathogenic variant ofPediatric investigation · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. A Study on the Genetics of Primary Ciliary Dyskinesia.Journal of clinical medicine · 2021
    Article
  13. A HomozygousGenes · 2021
    Article
  14. NovelFrontiers in medicine · 2021
    Article
  15. A genomics approach to male infertility.Genetics in medicine : official journal of the American College of Medical Genetics · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Hanan E ShamseldinDepartment of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.
Ibrahim Al MogarriDepartment of Pediatrics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.
Mansour M AlqwaieeDeparment of Pediatrics, Prince Sultan Military Medical City, Riyadh, Saudi Arabia.
Adel S AlharbiDeparment of Pediatrics, Prince Sultan Military Medical City, Riyadh, Saudi Arabia.
Khaled BaqaisDeparment of Pediatrics, Prince Sultan Military Medical City, Riyadh, Saudi Arabia.
Muslim AlSaadiDepartment of Pediatrics, College of Medicine, King Saud University, Riyadh, Saudi Arabia.
Talal AlAnziDeparment of Pediatrics, Prince Sultan Military Medical City, Riyadh, Saudi Arabia.
Amal AlhashemDeparment of Pediatrics, Prince Sultan Military Medical City, Riyadh, Saudi Arabia.
Afaf SaghierDepartment of Pediatrics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.
Waleed AmeenDepartment of Pediatrics, King Saud Medical City, Riyadh, Saudi Arabia.
Niema IbrahimDepartment of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.
Jason YangDivision of Pulmonary and Critical Care Medicine, Department of Medicine, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
Firdous AbdulwahabDepartment of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.
Mais HashemDepartment of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.
Raghu R ChivukulaDivision of Pulmonary and Critical Care Medicine, Department of Medicine, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
Fowzan S AlkurayaDepartment of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia. falkuraya@kfshrc.edu.sa.ORCID http://orcid.org/0000-0003-4158-341X
King Faisal Specialist Hospital & Research Centre · SARiyadh Armed Forces Hospital · SAHarvard University · USAlfaisal University · SAKing Saud Medical City · SAKing Saud University · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Unlike disorders of primary cilium, primary ciliary dyskinesia (PCD) has a much narrower clinical spectrum consistent with the limited tissue distribution of motile cilia. Nonetheless, PCD diagnosis can be challenging due to the overlapping features with other disorders and the requirement for sophisticated tests that are only available in specialized centers. We performed exome sequencing on all patients with a clinical suspicion of PCD but for whom no nasal nitric oxide test or ciliary functional assessment could be ordered. Among 81 patients (56 families), in whom PCD was suspected, 68% had pathogenic or likely pathogenic variants in established PCD-related genes that fully explain the phenotype (20 variants in 11 genes). The major clinical presentations were sinopulmonary infections (SPI) (n = 58), neonatal respiratory distress (NRD) (n = 2), laterality defect (LD) (n = 6), and combined LD/SPI (n = 15). Biallelic likely deleterious variants were also encountered in AKNA and GOLGA3, which we propose as novel candidates in a lung phenotype that overlaps clinically with PCD. We also encountered a PCD phenocopy caused by a pathogenic variant in ITCH, and a pathogenic variant in CEP164 causing Bardet-Biedl syndrome and PCD presentation as a very rare example of the dual presentation of these two disorders of the primary and motile cilia. Exome sequencing is a powerful tool that can help "democratize" the diagnosis of PCD, which is currently limited to highly specialized centers.

Indexed as

Genetic Predisposition to DiseaseAutoantigensCiliaCiliary Motility DisordersConsanguinityDNA-Binding ProteinsExome SequencingFemaleGene ExpressionGolgi Matrix ProteinsHumansMaleMicrotubule ProteinsMutationNuclear ProteinsPedigreeAKNA protein, humanAutoantigensCEP164 protein, humanDNA-Binding ProteinsGOLGA3 protein, humanGolgi Matrix ProteinsITCH protein, humanMicrotubule ProteinsNuclear ProteinsRepressor ProteinsTranscription FactorsUbiquitin-Protein Ligases

Identifiers

PMID32367404
OpenAlexW3020924580

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.