Evidence map›Paper›PMID 32365300›Full record

ArticleBiochemistry2020

Global Profiling of Cellular Substrates of Human Dcp2.

Yang Luo, Jeremy A Schofield, Matthew D Simon, Sarah A Slavoff

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Eukaryotic Microproteins.Annual review of biochemistry · 2025
    Review
  7. Article
  8. Cap-Specific mCells · 2024
    Article
  9. Application of Mammalian Nudix Enzymes to Capped RNA Analysis.Pharmaceuticals (Basel, Switzerland) · 2024
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Eukaryotic mRNA Decapping Activation.Frontiers in genetics · 2022
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yang LuoDepartment of Chemistry, Yale University, New Haven, Connecticut 06520, United States.ORCID 0000-0002-8709-0103
Jeremy A SchofieldChemical Biology Institute, Yale University, West Haven, Connecticut 06516, United States.
Matthew D SimonChemical Biology Institute, Yale University, West Haven, Connecticut 06516, United States.ORCID 0000-0001-7423-5265
Sarah A SlavoffDepartment of Chemistry, Yale University, New Haven, Connecticut 06520, United States.ORCID 0000-0002-4443-2070
Yale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Integrating RNAs into signaling pathways by engineering covalent RNA modificationDP2HD083992 · NICHD · YALE UNIVERSITY · PI SIMON, MATTHEW DAVID · 2014 to 2014
$2.5M
Structural and functional roles of the microprotein NoBody in mRNA decapping and decayR01GM122984 · NIGMS · YALE UNIVERSITY · PI SLAVOFF, SARAH ANN · 2017 to 2021
$1.6M
NCATS NIH HHS UL1 TR001863NICHD NIH HHS DP2 HD083992NIGMS NIH HHS R01 GM122984
6 · The paper itself

Abstract

Decapping is the first committed step in 5'-to-3' RNA decay, and in the cytoplasm of human cells, multiple decapping enzymes regulate the stabilities of distinct subsets of cellular transcripts. However, the complete set of RNAs regulated by any individual decapping enzyme remains incompletely mapped, and no consensus sequence or property is currently known to unambiguously predict decapping enzyme substrates. Dcp2 was the first-identified and best-studied eukaryotic decapping enzyme, but it has been shown to regulate the stability of <400 transcripts in mammalian cells to date. Here, we globally profile changes in the stability of the human transcriptome in Dcp2 knockout cells via TimeLapse-seq. We find that P-body enrichment is the strongest correlate of Dcp2-dependent decay and that modification with m

Indexed as

AnimalsCytoplasmEndoribonucleasesHumansModels, BiologicalRNA StabilityTranscriptomeDCP2 protein, humanEndoribonucleases

Identifiers

PMID32365300
PMCPMC7641959
OpenAlexW3021958322

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.