Evidence map›Paper›PMID 32365182›Full record

ArticleNucleic acids research2020

The ribotoxin α-sarcin can cleave the sarcin/ricin loop on late 60S pre-ribosomes.

Miriam Olombrada, Cohue Peña, Olga Rodríguez-Galán, Purnima Klingauf-Nerurkar, Daniela Portugal-Calisto, Michaela Oborská-Oplová, Martin Altvater, José G Gavilanes, Álvaro Martínez-Del-Pozo, Jesús de la Cruz and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Miriam OlombradaDepartamento de Bioquímica y Biología Molecular, Facultad de Química, Universidad Complutense de Madrid, Spain.
Cohue PeñaInstitute of Biochemistry, ETH Zürich, Otto-Stern-Weg 3, CH-8093 Zürich, Switzerland.
Olga Rodríguez-GalánInstituto de Biomedicina de Sevilla, Hospital Universitario Virgen del Rocío/CSIC/Universidad de Sevilla, Seville, Spain.
Purnima Klingauf-NerurkarInstitute of Biochemistry, ETH Zürich, Otto-Stern-Weg 3, CH-8093 Zürich, Switzerland.
Daniela Portugal-CalistoInstitute of Medical Microbiology, University of Zürich, Gloriastrasse 30, CH-8006 Zürich, Switzerland.
Michaela Oborská-OplováInstitute of Biochemistry, ETH Zürich, Otto-Stern-Weg 3, CH-8093 Zürich, Switzerland.
Martin AltvaterInstitute of Biochemistry, ETH Zürich, Otto-Stern-Weg 3, CH-8093 Zürich, Switzerland.
José G GavilanesDepartamento de Bioquímica y Biología Molecular, Facultad de Química, Universidad Complutense de Madrid, Spain.
Álvaro Martínez-Del-PozoDepartamento de Bioquímica y Biología Molecular, Facultad de Química, Universidad Complutense de Madrid, Spain.
Jesús de la CruzInstituto de Biomedicina de Sevilla, Hospital Universitario Virgen del Rocío/CSIC/Universidad de Sevilla, Seville, Spain.
Lucía García-OrtegaDepartamento de Bioquímica y Biología Molecular, Facultad de Química, Universidad Complutense de Madrid, Spain.
Vikram Govind PanseInstitute of Medical Microbiology, University of Zürich, Gloriastrasse 30, CH-8006 Zürich, Switzerland.
University of Zurich · CHUniversidad Complutense de Madrid · ESInstituto de Biomedicina de Sevilla · ESETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ribotoxin α-sarcin belongs to a family of ribonucleases that cleave the sarcin/ricin loop (SRL), a critical functional rRNA element within the large ribosomal subunit (60S), thereby abolishing translation. Whether α-sarcin targets the SRL only in mature 60S subunits remains unresolved. Here, we show that, in yeast, α-sarcin can cleave SRLs within late 60S pre-ribosomes containing mature 25S rRNA but not nucleolar/nuclear 60S pre-ribosomes containing 27S pre-rRNA in vivo. Conditional expression of α-sarcin is lethal, but does not impede early pre-rRNA processing, nuclear export and the cytoplasmic maturation of 60S pre-ribosomes. Thus, SRL-cleaved containing late 60S pre-ribosomes seem to escape cytoplasmic proofreading steps. Polysome analyses revealed that SRL-cleaved 60S ribosomal subunits form 80S initiation complexes, but fail to progress to the step of translation elongation. We suggest that the functional integrity of a α-sarcin cleaved SRL might be assessed only during translation.

Indexed as

Active Transport, Cell NucleusCell NucleolusCell NucleusEndoribonucleasesFungal ProteinsProtein BiosynthesisRibosome Subunits, Large, EukaryoticRicinRNA, RibosomalSaccharomyces cerevisiaealpha-sarcinEndoribonucleasesFungal ProteinsRicinRNA, RibosomalRNA, ribosomal, 25S

Identifiers

PMID32365182
PMCPMC7293039
OpenAlexW3022064008

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.