Evidence map›Paper›PMID 32363769›Full record

ArticleMicrobial biotechnology2020

Co-occurrence of antibiotic, biocide, and heavy metal resistance genes in bacteria from metal and radionuclide contaminated soils at the Savannah River Site.

Jesse C Thomas, Adelumola Oladeinde, Troy J Kieran, John W Finger, Natalia J Bayona-Vásquez, John C Cartee, James C Beasley, John C Seaman, J Vuan McArthur, Olin E Rhodes and 1 more

Open access · goldAbstract read
In one paragraph

Article in Microbial biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
5.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 151 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 4 countries.

Jesse C ThomasDepartment of Environmental Health Science, University of Georgia, Athens, GA, 30602, USA.ORCID 0000-0002-9618-4662
Adelumola OladeindeBacterial Epidemiology and Antimicrobial Resistance Research Unit, United States Department of Agriculture, Athens, GA, 30605, USA.
Troy J KieranDepartment of Environmental Health Science, University of Georgia, Athens, GA, 30602, USA.
John W FingerDepartment of Biological Sciences, Auburn University, Auburn, AL, 36849, USA.
Natalia J Bayona-VásquezDepartment of Environmental Health Science, University of Georgia, Athens, GA, 30602, USA.
John C CarteeDivision of STD Prevention, Centers for Disease Control and Prevention, Atlanta, GA, 30329, USA.
James C BeasleySavannah River Ecology Laboratory, University of Georgia, PO Drawer E, Aiken, SC, 29802, USA.
John C SeamanSavannah River Ecology Laboratory, University of Georgia, PO Drawer E, Aiken, SC, 29802, USA.
J Vuan McArthurSavannah River Ecology Laboratory, University of Georgia, PO Drawer E, Aiken, SC, 29802, USA.
Olin E RhodesSavannah River Ecology Laboratory, University of Georgia, PO Drawer E, Aiken, SC, 29802, USA.
Travis C GlennDepartment of Environmental Health Science, University of Georgia, Athens, GA, 30602, USA.
University of Georgia · USAuburn University · USCenters for Disease Control and Prevention · USUnited States Department of Agriculture · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Contaminants such as heavy metals may contribute to the dissemination of antimicrobial resistance (AMR) by enriching resistance gene determinants via co-selection mechanisms. In the present study, a survey was performed on soils collected from four areas at the Savannah River Site (SRS), South Carolina, USA, with varying contaminant profiles: relatively pristine (Upper Three Runs), heavy metals (Ash Basins), radionuclides (Pond B) and heavy metal and radionuclides (Tim's Branch). Using 16S rRNA gene amplicon sequencing, we explored the structure and diversity of soil bacterial communities. Sites with legacies of metal and/or radionuclide contamination displayed significantly lower bacterial diversity compared to the reference site. Metagenomic analysis indicated that multidrug and vancomycin antibiotic resistance genes (ARGs) and metal resistance genes (MRGs) including those associated with copper, arsenic, iron, nickel and zinc were prominent in all soils including the reference site. However, significant differences were found in the relative abundance and diversity of certain ARGs and MRGs in soils with metal/radionuclide contaminated soils compared to the reference site. Co-occurrence patterns revealed significant ARG/MRG subtypes in predominant soil taxa including Acidobacteriaceae, Bradyrhizobium, Mycobacterium, Streptomyces, Verrumicrobium, Actinomadura and Solirubacterales. Overall, the study emphasizes the potential risk of human activities on the dissemination of AMR in the environment.

Indexed as

DisinfectantsMetals, HeavyAnti-Bacterial AgentsBacteriaGenes, BacterialHumansRadioisotopesRNA, Ribosomal, 16SSoilSoil MicrobiologyAnti-Bacterial AgentsDisinfectantsMetals, HeavyRadioisotopesRNA, Ribosomal, 16SSoil

Identifiers

PMID32363769
PMCPMC7264878
OpenAlexW3022703210

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.